Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.4e-15 1.7e-11 45.3 0.0 124 169 8 53 2 53 0.93

2 3 0.77 5.5e+03 -1.9 0.0 70 108 194 231 178 270 0.59

3 3 1.9 1.3e+04 -3.1 0.0 37 51 301 315 295 319 0.76

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.4e-15	1.7e-11	45.3	124	169	8	53	2	53	0.93
2	3	0.77	5.5e+03	-1.9	70	108	194	231	178	270	0.59
3	3	1.9	1.3e+04	-3.1	37	51	301	315	295	319	0.76

Coding Sequence: ATGGCCGCCATTGCCACAGAAAACTTCGACCACAAGAACCATCCCCAGAGCATAGACCTGAACGCAGTTCGGCTATGTTTCCAAGTGTTCCTCCCGGACGAGTCAGGCCGGCTGCGGCGCCCGCTGACGCCCGTCGTGTCCGACGTCATCTACGACAAGAAGGCCATGAGCGACCTGCTCATCATGCGGTCCAGCCATTGTTCTGGCACCGCTAGAGGAGGCACGCAAGTCATACTACTGTGTGAGAAGGTGACCCGAGAAGACATAGAGGTGGTGTTCTACCAGGAGGAGAACGGTGTCGTGGTGTGGGAGGAGATGGCCATCCGTATCCTGGTGCATAAGCAAGTGGCCATCGCCTTCGAGACGCCGCCATACAGATTCCCGCATACCACTGAACATGTCAATGTCCACTTCCAActgaagagactgtcagacaacGCGCGCAGCAACTCTCTCCCCTTCGAGTACATCCCCGAGTACACAGGTACCGCGCGCAAGCCTCTCCCTGACCTCTCCCTGTTCTCCCTCCTCCTCGACAAGCGCACCGACACCAACAACAACAAGCAGGACAAGGTCGAGCTCGTCAGCTCCACTACTGACTCCGTTAGCGTTAACGTTTCCGATGAGACCGAATCCGCGACCATTACCGACGTTAACGGTAACCTCGAAGTCACGGACACCGAAATCATTGATACCAACGAAAAGAGCTTGAACGAACTCCTCGATCAGGTCGCGGAACTAGACGAGATTTACTCGGAAAACCGCACGCGCTTAGAAAATATTTCCACCTCTCTAGCTAACGATAATGAAGAAATAGAGGACTTTAACGACGCGGGAACTTACACTAGCTTACAACTTGCTTTCAAAAACCCGGTGGAAATCGCCGAACCAGACCCAATGTCTTACGAAGACGTACAGGTCCAAACTTACCGCGGTCCCCATCATCGAGTTCAGTCCGTTAAAACGTGA
Protein Sequence: MAAIATENFDHKNHPQSIDLNAVRLCFQVFLPDESGRLRRPLTPVVSDVIYDKKAMSDLLIMRSSHCSGTARGGTQVILLCEKVTREDIEVVFYQEENGVVVWEEMAIRILVHKQVAIAFETPPYRFPHTTEHVNVHFQLKRLSDNARSNSLPFEYIPEYTGTARKPLPDLSLFSLLLDKRTDTNNNKQDKVELVSSTTDSVSVNVSDETESATITDVNGNLEVTDTEIIDTNEKSLNELLDQVAELDEIYSENRTRLENISTSLANDNEEIEDFNDAGTYTSLQLAFKNPVEIAEPDPMSYEDVQVQTYRGPHHRVQSVKT

Sequence clustering based on sequence similarity using MMseqs2