Basic Information

Insect: Agrotis ipsilon
Gene Symbol: Unr
Assembly: GCA_028554685.1
Location: CM052954.1:19690979-19708497[+]

Transcription Factor Domain

TF Family: CSD
Domain: CSD domain
PFAM: PF00313
TF Group: Beta-Scaffold Factors
Description: In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.7e-16 2.9e-12 47.2 0.0 2 65 105 167 104 168 0.95

2 9 0.0031 16 6.4 0.0 17 58 199 240 187 248 0.73

3 9 6.1e-18 3.1e-14 53.5 0.4 2 65 258 317 257 318 0.96

4 9 0.044 2.2e+02 2.7 0.0 40 64 383 409 374 411 0.84

5 9 8.8e-12 4.5e-08 33.8 0.1 2 51 424 470 423 475 0.96

6 9 0.039 2e+02 2.9 0.1 43 64 563 586 556 588 0.89

7 9 1.2e-14 6.3e-11 42.9 0.1 1 57 611 666 611 676 0.86

8 9 1.5 7.7e+03 -2.2 0.0 40 51 735 746 732 754 0.80

9 9 9.8e-14 5e-10 40.1 0.0 3 65 764 826 762 827 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.7e-16	2.9e-12	47.2	0.0	2	65	105	167	104	168	0.95
2	9	0.0031	16	6.4	0.0	17	58	199	240	187	248	0.73
3	9	6.1e-18	3.1e-14	53.5	0.4	2	65	258	317	257	318	0.96
4	9	0.044	2.2e+02	2.7	0.0	40	64	383	409	374	411	0.84
5	9	8.8e-12	4.5e-08	33.8	0.1	2	51	424	470	423	475	0.96
6	9	0.039	2e+02	2.9	0.1	43	64	563	586	556	588	0.89
7	9	1.2e-14	6.3e-11	42.9	0.1	1	57	611	666	611	676	0.86
8	9	1.5	7.7e+03	-2.2	0.0	40	51	735	746	732	754	0.80
9	9	9.8e-14	5e-10	40.1	0.0	3	65	764	826	762	827	0.89

Sequence Information

Coding Sequence: ATGTCCAGCAATCCTCAGTGGAAGATGTTCCAGCCGCCAGATTCCCACTCATCACCCTTACAAGATATCTTAGATCTCCAGCATTCGAATATGCAGCCCAAGTCCTCATACCGTAATGGTGAGTACCCGAGTTCACCAAGGGATAGTTACAACAGTCAGTCTAAGTCCGGAAACGGTGGCGGTAACCGTTTCTCTCTTGGATACAATATAGACGGCTGCCCAATGGGGGACTCAGTTTACTCTTCTTCTGGCTCAACTAACAATTCTTCATCTCAGAATTATGATTCAATGAATCACCCACCTATTAGAGAGACAGGAATTATCGAGAAACTGCTTCACTCCTATGGATTTATACAATGCTGTGAGAGGCAGGCCCGCCTGTTTTTTCATTTCAGCCAGTTTAGTGGCAATACTGAACATCTTAAGATAGGAGATCCTGTAGAATTTGAGATGACATATGATCGTCGGACTGGAAAACCAATTGCATCGACTGTCACCAAGATTGCGCCCGAAGTGgtGTTGAGTGAAGCGCGTGTAACTGGAACTGTAACAACCGAAGTTAAGGGAGAAGGCTCTGGGGATAATACTGGAAGAATTTCGTATGAGAATCGTGGTGAATGTTTCTTTTTACCTTATACTAAAGACGATGTCGAGGGTAACGTCATCTTGCGTACGGGCGACGCTGTGAGCTTCCAGATAGCTACCAATCAACGAGGTACTTTGGGAGCATGTCATGTCCGCTTTGAAAATCCCGTGCATCCCGTCAAATATCACGGCGTGGTATGTTCGATGAAGGAAAACTTTGGATTCATCGAGCGCGCAGATGTGGTGAAAGAGATATTCTTTCACTATTCAGAAGCTAAAACTAAAGAAGAGTTGGTTTTGGGAGATGATGTCGAGTTCATCATTCAAACTAGAAACGGAAAGGAAGTAGCTTGCAACATTACGAAGTTACCAAGCGGCTCCGTGGTGTTCGAGGATGTGAGTCCGGAGATAATGCGCGGGCAAGTGTTGAAGCCATTGGAGCGCGGGACTTTGGTCCGCGTGGCTCAGAACGATCCTCTGCCGGGTCGCATCCGATATCGTGCGGCCGACCATTCTGAAGTTGAGGTGCCTTTTGGTGATAAGGATCAGTGTGGTGAGTTCACTCTGCGCCACGGAGACTGGGTCCAGTTCCAAGTAGCTACGGACCGCCGGGACCAGCTGAAACGGGCCACGAATATCTCATTGCTGGACGAGTCATTTAACGTTTCTGGCGAACGACGGGAGCAAGGAATCGTATGTTCTCTGAGGGACGGATTCGGATTTATCCGCTGTGTTGAGAGGGAACAAACAATGTTCTTCCATTTCGCCGAAGTGCTTCGTCTAGGACAAGAACTCAGCGTAGGCGATGAGGTGGAGTTTACAGTGGACCCAGTGAGCACTTTTTCGAACATGAACAACCGTCAGTCTGGGATTCGTATCAAGCACCTGTTGCCGGGAACTGTGAAATTCGAGACTTTGATCGAACACGGCGCTCGTGGTGTGATCACCAAAGAGGCTCAAATGTATCCGTCTTCCACTTCTAGCCCCACAAGACCCCCGCCGTCGGAATATAATGGCGTGATAAGTTGGCAAGTGAACCCACAAACAAAGAAATCTGTCCCATACTCTTCCAAAAAATGTGAATCTAAGATGCTGCCCCGTACTGGTGACGTCGTTACTTTTGATGTGTACCAGGTGAAACGGACAAAGGAGTTGGTAGCTAAGTCAGTGCAAGTACAACATAGTCTTACTAACGGGAACAGCAgtagcagcagcagcagcaatGGAGCCGGCAACCGTCCCATCATGCAAGGATTCATCGCTGCTCTCAAGGATGGATTCGGCTTCATAGAAACTTCAGACCACAATAAAGAAGTGTTCTTTCATTTTAGTAATCTGGAAGGCAATCCAGATGGGTTGGAACTGGGCTGTGAGGTGGAGTACACGCTGGGACGTGTGAACGGTTCAGGGGGTGGCTGCGCGAGCGCCGAGTACGTGCGGGTGCTACCTCGCGGGTCGGTGACAGTTGCGAAGCCGCTGGACCCTACACTCAATGGAACGGTCACCAGGACCCTTAGGGCTCTCAATCCTGACCAGGCCCACTATTCTGgTGTAATTCAAGTGGAAGGCGGCACATCATACGAGTTCGGAATAATGGGTCTGGCGTGCAAGCGTGAGATACTTCAGGTTGGCGACCCAGTCACTTTCCAGGCAGATGTTGAGGGCCGGGCCACTAACATTGTGCCAATTAGGAAGAAGAGGCGTGCCACAGTCGATGCTATTAAAGGTGGTTTTGGTTTTCTGTCTCTGGAGGCTGAGGACAACCGCCGTCTATTTTTCCACATGTCGGAGGTGCGTGGCAACCACTCGGAGCTACAGCCCGGCGATGTGGTCGAGTTCGTCATGCTGACCAACCCTAGGAATGGCAAGTCTTCTGCTTGCAACGTTGTCAAAATTGGTGGTAAAGGTTCCGGGGCCAAGGCCCGGTGCGAGCGCCCGGAGCGCTTGCTGGCGCGGCTCCGTACGGCCTCGTTGGAAGAGTCCAATGGACCGCGGGTAGTCGTCATCCGCGCTCCTCGCGGACCTGACGGCACCCGCGGATTCCGCCCGCGTCGCACCGTCGCAGAATTGATCACTTTAAGATGTGGCATGATGTTGTTGAATGGTCTTGTTGCATGGTAG
Protein Sequence: MSSNPQWKMFQPPDSHSSPLQDILDLQHSNMQPKSSYRNGEYPSSPRDSYNSQSKSGNGGGNRFSLGYNIDGCPMGDSVYSSSGSTNNSSSQNYDSMNHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVILRTGDAVSFQIATNQRGTLGACHVRFENPVHPVKYHGVVCSMKENFGFIERADVVKEIFFHYSEAKTKEELVLGDDVEFIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGTLVRVAQNDPLPGRIRYRAADHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRATNISLLDESFNVSGERREQGIVCSLRDGFGFIRCVEREQTMFFHFAEVLRLGQELSVGDEVEFTVDPVSTFSNMNNRQSGIRIKHLLPGTVKFETLIEHGARGVITKEAQMYPSSTSSPTRPPPSEYNGVISWQVNPQTKKSVPYSSKKCESKMLPRTGDVVTFDVYQVKRTKELVAKSVQVQHSLTNGNSSSSSSSNGAGNRPIMQGFIAALKDGFGFIETSDHNKEVFFHFSNLEGNPDGLELGCEVEYTLGRVNGSGGGCASAEYVRVLPRGSVTVAKPLDPTLNGTVTRTLRALNPDQAHYSGVIQVEGGTSYEFGIMGLACKREILQVGDPVTFQADVEGRATNIVPIRKKRRATVDAIKGGFGFLSLEAEDNRRLFFHMSEVRGNHSELQPGDVVEFVMLTNPRNGKSSACNVVKIGGKGSGAKARCERPERLLARLRTASLEESNGPRVVVIRAPRGPDGTRGFRPRRTVAELITLRCGMMLLNGLVAW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236412;
90% Identity: iTF_00783187; iTF_01076148; iTF_01525691;
80% Identity: -