Acla020846.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940928.1:20904661-20914031[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-08 0.0016 20.0 0.1 18 48 57 89 53 91 0.88 2 3 0.0087 4.4e+02 2.5 0.1 25 48 198 225 192 230 0.69 3 3 0.0013 66 5.2 0.1 18 38 273 293 258 301 0.87
Sequence Information
- Coding Sequence
- ATGCTCCTAATGCGACAAAATATTACAGTTTGGAGTAAAATGCAGATCAGAGAGTCTCACAATCAGACGATTCTGCGGAATTGTAATACAATAATCAAGAGAGAGCCGAACTTTACTGACGTCTCAAAAACTAGAAGTAATGTTTCCACAGTATGGCAAGCATTTCTAAGAAGCAAGGACAAACAGTCTGCGAAATGTAAATTGTGTCGCGCAGTCATAAAAGTCAATGATACTTCGTCATTAAGACAGCACTTGGAAGTGAAACACAATATTCTAGAAGAAATGGAAAATATTGTGTGTTTTGTGGAAGCCGAGGACGAAAGTTCCGAAAATGAAGCAGGCAATACGTCAACTGACGAAGATAAAATTAACATCCGGAAAAAAGGTTCCAAAACCAAGAAAAAAACACGCAAAACTGCTGCCAAGGTGGATTTGGGTGAAAATAACAGTAAGTGTACTGTGGTAGCACCTGTGCCTATTCAGCAAAGAAAACAGATGGAATCATCTGATTTGTATGAGATCTCAAACATCGACAAAAATAAGGTTTCCATAATCTGGCAAGCATTTCtcacaagaaaagacaaagacTTTGCAAAATGTAAATTATGTCGCGAATTGGTAAAAATCGAAGGTACTCGTACTACGTCATTGAGGGATCACTTGGAAACGAAACACAATATACGAGAAGAAATCGAAAATATCGTGTGTGTTGTGGAAGCTGAAGATGAAAGTACTGAAAATGAAGaCGAGGAGTTCTCAAACCCAAAACTGAATCACCCGAATACTGAACCATCCCCAGTTTGGACGTATTATCTTAGAAGTAAAGATAAAATGCGAGCAAAATgtaaaatttgtgaaaaagtgaTAAAATGTACCAGAGGCTGCACCTCAGGATTGTACATGACGAAGAGCAACGGAAAAACTTACATACAATTTGATGGCTACTCCTACTCAAGAAACAAGGTTGCTGGTGATCGGACGTATTGGATCTGCACAAGTAGAAGCTCTAAAAAGTGTACTGGTTCTGGAAATCTACCGTTACTAAAATTTTCAGAACCACTATTCGGGCAATCTAGAAAAGGTAATCCAGTGATCCTGGTCGGACGTTTTCGATTTATCAAGGAACGGGATTTTGGTGATAAGATCCGATGGTGTTGTGTCAAGAGAAGAAGATTAAGATGTACGGCGGCACTGACGACGGTAGAAGGAGTCGTCGTCAAGATGAAAAGAGTCCATAATCATCAgtga
- Protein Sequence
- MLLMRQNITVWSKMQIRESHNQTILRNCNTIIKREPNFTDVSKTRSNVSTVWQAFLRSKDKQSAKCKLCRAVIKVNDTSSLRQHLEVKHNILEEMENIVCFVEAEDESSENEAGNTSTDEDKINIRKKGSKTKKKTRKTAAKVDLGENNSKCTVVAPVPIQQRKQMESSDLYEISNIDKNKVSIIWQAFLTRKDKDFAKCKLCRELVKIEGTRTTSLRDHLETKHNIREEIENIVCVVEAEDESTENEDEEFSNPKLNHPNTEPSPVWTYYLRSKDKMRAKCKICEKVIKCTRGCTSGLYMTKSNGKTYIQFDGYSYSRNKVAGDRTYWICTSRSSKKCTGSGNLPLLKFSEPLFGQSRKGNPVILVGRFRFIKERDFGDKIRWCCVKRRRLRCTAALTTVEGVVVKMKRVHNHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00040070;
- 90% Identity
- iTF_00040070;
- 80% Identity
- iTF_00040070;