Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940934.1:10918395-10935594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00048 0.06 15.3 0.2 2 23 144 165 143 165 0.93

2 10 0.0007 0.087 14.7 2.4 1 23 171 193 171 193 0.96

3 10 8.1e-05 0.0099 17.7 0.3 1 23 280 302 280 302 0.98

4 10 0.00073 0.09 14.7 0.0 3 23 380 401 378 401 0.90

5 10 0.00023 0.029 16.3 0.1 1 23 416 438 416 438 0.97

6 10 5.6e-05 0.0069 18.2 0.2 1 23 471 493 471 493 0.98

7 10 0.00075 0.093 14.7 0.2 1 23 499 521 499 521 0.97

8 10 0.00042 0.052 15.4 0.3 1 23 527 549 527 550 0.95

9 10 0.13 16 7.6 1.6 1 23 563 585 563 585 0.96

10 10 0.44 54 6.0 0.1 1 20 731 750 731 753 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00048	0.06	15.3	0.2	2	23	144	165	143	165	0.93
2	10	0.0007	0.087	14.7	2.4	1	23	171	193	171	193	0.96
3	10	8.1e-05	0.0099	17.7	0.3	1	23	280	302	280	302	0.98
4	10	0.00073	0.09	14.7	0.0	3	23	380	401	378	401	0.90
5	10	0.00023	0.029	16.3	0.1	1	23	416	438	416	438	0.97
6	10	5.6e-05	0.0069	18.2	0.2	1	23	471	493	471	493	0.98
7	10	0.00075	0.093	14.7	0.2	1	23	499	521	499	521	0.97
8	10	0.00042	0.052	15.4	0.3	1	23	527	549	527	550	0.95
9	10	0.13	16	7.6	1.6	1	23	563	585	563	585	0.96
10	10	0.44	54	6.0	0.1	1	20	731	750	731	753	0.92

Sequence Information

Coding Sequence: ATGGAGGGGGAACCTGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCAGGTGCTGTTGAATCAGAGGAAGTGATAACAGGTCTAGATAATGTGCAGCACACTGGATATTCCAATATGACAGCAGAAGAGATGATGAGCACGGACCAAATGGCTGCAGAGAACTTGATGTTCTTATCTCAAGATGTAGTGAGCTACACGGAGACAGCGGAACTGGCTGATGATCCTAGCGTGGAGTGTGTCACAGAAGAGGTCATTACTGACGATTGGGTCACTCCTGGTGGGCAGGAAAGGTACCAAGTGGAAGTTCCAATAGATCATCTGAATAATGCAGAAGTGGTTATGAAAGAAGATAATGACCTTGATGTTCCTTTACCAACAGATCAAGATCAATACACAGCTATGCGTCCTTGGCCGTGCGACTTCTGTTCGCGTCGGTTCCGCAAGAAGGCCGCGCTAATGAACCACATGGTGGCTCATCAGAACGACCGGCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAATGCGACCTCATGAACCATCTCAAGGTCCACGCCTTTGTGCCTGAGAACCCCGATTCTATAGATTATGAGGATGTTTTAGACAATAACCAAATTGTGAAACCAAAGAAGAAACGCGGTCGGCGGAAAAAGAATCCTGAACCGGTGGAAGAGAACGGCATGTGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCTCCCCGCGCCCGCCGCCCTCCCCGCCCTCGCCCGCGCCGCCCTCCCCCCCGCCCGCGCCCGCAGACCCCACGCGGCCCTTCGTGTGCAGGCACTGCGGGGTGGGCTTCGCCAGGGAGAAGGCGCTGCAGTCACATGCCAGGGTGCACGGCGGCGACTCTCCGGTGGAGTGCGGCTCGTGCGGCGAGCTGTGCTGGTCGCGGGAGGCGCTGGCCGCGCACGTGCAGCACAGACACCCGCACCTGCCGCGGGACCTGCCGCCCGAGCCAAGGGAAGAGGACGACGACTCGGGAGATGACATGGAGTTCCGTCTGTCCCCGCTGTCTCACGGAGCCCCCGAGCGCGCCGTGTACGACACCATGCGCGGGCCCGAGCTGTTCTGTCAGGACTGCGGCGTGGCCTTCCAGCGAGCGGACCTGCTGAGGAGACACGTGGCCGCCGCACACAGTTACAAGCGACACGACAGCTCGAGCAGCACCTGGGCAGAGCACACGTGCGACGTGTGCGGCGAGGGGTTCACTGACGCGCTGCAGCTGCTGGCGCACGCTGAGACACACGTGGCCGAGAGACACCGCGCGCCGCACAACGTGCCCAGgttaaaaaaaataggtagagGTCGGAATAATACGTCATCTTCGAATAATTCTCGGCAGTTTCCTTGTCGAGTATGTGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGAGAGAGACCGTACGCGTGCCGCTTCTGTTGGAAGGCCTTCGCGGACGGAGGGACGCTGCGGAAGCATGAGAGGATACACACAGGCGAAAAACCGTACGCATGCGCGGTGTGTCCGCGTGCGTTCAACCAGCGTGTGGTACTACGTGAACATGTGCGCTCGCATCACTCCGCTCCCGACAGACGCGCTAACGGTGGTCCGGCCTACTGCTGTGTAGTGTGTAGTCGCACGCTACACTCGAGTGCAGAACTAGTGCAGCATCTTATACAACACTGTGACGCTAACACGGCGCTCAGAAGACAACCCCAGACGGGGCCTCGCAAGTACAAGAGAAGACGAAAATTGAAGACAGAGCAGTCTCCCCCGCGCGACTGGGAGCGCCCCTCCCCCTCCCCTCCCCCCGCGTCGCGCTCCCCCTCCCCCGCGTCCGACACGCCGCACCTGTCGCCCGCGTCCCCGCCCTCCCCCGCGTCTCCCCCATCCCAGTtgcgtcgccgccgccgccgccgcgtccCCTCCCCCCCGGCCCGGCCGCGCATGATCCACACAGAGGCGCGCCCCGccccccgccgccgccgcggccCCGCGCGCTCGGTGTCCCCCCCCTCCCGGCCGCGCCGCCCCCCCCGCCGCCCGGCCGACGACCTGCGCGCCATCCGTCTGAAGGACGAGCCCGACCCCGAGCCGGCCGCGGACCTGGGCGGGCCATACAAGTGTGAGATGTGCTCGCTAGAGTTCCTGCGGCGGGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
Protein Sequence: MEGEPEDFNLQWEEEVEVKHSPGAVESEEVITGLDNVQHTGYSNMTAEEMMSTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVTPGGQERYQVEVPIDHLNNAEVVMKEDNDLDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPENPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPRPPPSPPSPAPPSPPPAPADPTRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALAAHVQHRHPHLPRDLPPEPREEDDDSGDDMEFRLSPLSHGAPERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAETHVAERHRAPHNVPRLKKIGRGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCSRTLHSSAELVQHLIQHCDANTALRRQPQTGPRKYKRRRKLKTEQSPPRDWERPSPSPPPASRSPSPASDTPHLSPASPPSPASPPSQLRRRRRRRVPSPPARPRMIHTEARPAPRRRRGPARSVSPPSRPRRPPRRPADDLRAIRLKDEPDPEPAADLGGPYKCEMCSLEFLRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01064911;
90% Identity: iTF_00042885;
80% Identity: -