Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940944.1:3691545-3716172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0044 0.55 12.2 1.7 1 23 228 250 228 250 0.98

2 12 0.089 11 8.1 2.0 1 23 257 280 257 280 0.94

3 12 0.17 21 7.2 3.5 1 23 284 306 284 306 0.96

4 12 0.00069 0.085 14.8 4.4 1 23 311 334 311 334 0.98

5 12 8.9e-05 0.011 17.6 2.5 1 23 338 361 338 361 0.97

6 12 0.027 3.3 9.8 0.3 3 22 382 401 381 405 0.92

7 12 0.009 1.1 11.3 0.8 2 23 414 435 413 435 0.96

8 12 0.00012 0.015 17.1 1.4 1 23 453 476 453 476 0.97

9 12 7e-06 0.00086 21.1 1.8 2 23 486 507 485 507 0.97

10 12 7.9e-05 0.0097 17.7 1.6 1 23 513 535 513 535 0.98

11 12 2.1e-06 0.00026 22.7 0.3 1 23 541 563 541 563 0.98

12 12 4e-06 0.0005 21.8 2.2 1 23 569 592 569 592 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0044	0.55	12.2	1.7	1	23	228	250	228	250	0.98
2	12	0.089	11	8.1	2.0	1	23	257	280	257	280	0.94
3	12	0.17	21	7.2	3.5	1	23	284	306	284	306	0.96
4	12	0.00069	0.085	14.8	4.4	1	23	311	334	311	334	0.98
5	12	8.9e-05	0.011	17.6	2.5	1	23	338	361	338	361	0.97
6	12	0.027	3.3	9.8	0.3	3	22	382	401	381	405	0.92
7	12	0.009	1.1	11.3	0.8	2	23	414	435	413	435	0.96
8	12	0.00012	0.015	17.1	1.4	1	23	453	476	453	476	0.97
9	12	7e-06	0.00086	21.1	1.8	2	23	486	507	485	507	0.97
10	12	7.9e-05	0.0097	17.7	1.6	1	23	513	535	513	535	0.98
11	12	2.1e-06	0.00026	22.7	0.3	1	23	541	563	541	563	0.98
12	12	4e-06	0.0005	21.8	2.2	1	23	569	592	569	592	0.98

Sequence Information

Coding Sequence: ATGGAAAAATTATCAATGTGTAGGATATGTTTAGTGGAAAATGTTCGCATGTTTGTAGTAGAAAATAAGGACCTGCAAGAAACTTACGAGAAACTGACTAATACACCCtttGTAACTGAAGACAGTAGACCGATGCTCGCTTGTGTCTTCTGCTTCACTAGACTAAAGCAATGCGGTCAATTGCAGAGGAAATGTCTGGAAGCAGAGACCCTGCTCAATCAGATGTTGAATGGTGTTTTTGGGATAACACCTTTAAAGATAAAGGAAGAAGTTGACTGTTTTGGAGGATACATCAGGACAGCTGTTCAGCATGTGACCATAGATCGGAGTGTGTCAGTAGACGGTGATATCAAGGAGGAGCCAACTGCTGACAGAACTGATGATGTCATCAGTTATCAGTTCAAGGTGGAACGGAATGAGgATTTAGAACAGGAGAATACTGACAATGGCTTCCATGAAGATGATATGCCAACAAATCTTGCTGAATCAGATTCAGAAGATGATGTGCCGCTGGTGAAGTTCAAGTTTGAAGTGGAAGAAGAGCCACTGGGAACGGAGAAGAAGAGGAAGGTTAAAAATGAAATGCGTAAACCTGACTGCAGCGAAATTATCCTGAGTAAAGAAGAACAGCTGGAGAGTCTCCTGGCCAGGTCCAGGTCCTCCAACTACCTTCACTCGCCTTACAAATGTAACTCTTGCTATAAAGGCTTTGTGGACACCACGGCTTATGAGAACCACAAGATGAAGCATGATTTGAGCAGTGGTCCACACATATGCGACATATGCCACATGCGATACCGCTCCGTGCAACTGATGCGAACACATGCCAGTACTGCGCACGCACGCAtatttaaatgtaataaatgtgGCCATGTCTCGCATACGAGcAATCAAGCCAGGATTCATGAGAAATGGCATGACGGACATACGTACGAATGTCAACTCTGTAGCCATACATTCAGGAAGCCGACGTCGTATCTATCTCATATGCGCAAGCGTCACCCGACGGAGCACGTGTGTAACATCTGTGGGGAGACCTTCGTGGGCAAACATGGACTGCAGATGCATAAGAGAAAGACTCATATTAATGGAGAAAagATGGTTGACCCCGCTGACCCCACAGACCCCGCGTCCAAGCGATTCTGTGTTGAATGTAACATACAGTTCTATAATTCCGAAGCTTGGAAACGACATATACTGCGCTCAGTAAAACATACGCTGAAAACTGAAGAGAGCAAGTCTTGTTCTATTTGCCAATGGCAGTACGCCGGTCACGAGACACTAGAGACTCATATGAAAGATCACGCTAAAGCGCTGCGCAGGCGCAAACCACCCGCCACTGCCAAGGAACGGAGCTTTAGATGTAATCAGTGCGGCTCAAACTTCATGACTCGATCCAAGCTGCAGGCACACACCAACAGAGCTCACTTAGGATTGAAATATAACAAGAATATCGTGTGTGAGGTGTGCGGGAAGAAATGTTCGTCAAACGCGACCCTGAAATACCACCAACGCACCCACACGGGTGAGAAGCCCTACCCCTGCCTCAGCTGCTCCAAGCACTTCGTGGACAGCAACCAGCTCCGGATCCACGTCCGGACACATACGGGGGAGAAGCCCTACGTGTGTGCGGCCTGCGGGAAGAGATTCACGCAGAAGCCCGCGCTCAATAGACATTATAGAGTCCATACCGGGGCGAAGCCCTACACTTGCCAGTACTGCTCCAGAACTTTCAGTCAATCAAATTCCCTCAAACTTCacgtcaaaactgtacatttgAAACAACCGGCTAACAGGAAGAATAAAACTAAATCCGTAGCTCAAGAAGCGAAAGTGGAGAAGAATTGTGAAGAAGAAGGTTCACTACAGACTGTTAGGGTATTCTCTAAGTAG
Protein Sequence: MEKLSMCRICLVENVRMFVVENKDLQETYEKLTNTPFVTEDSRPMLACVFCFTRLKQCGQLQRKCLEAETLLNQMLNGVFGITPLKIKEEVDCFGGYIRTAVQHVTIDRSVSVDGDIKEEPTADRTDDVISYQFKVERNEDLEQENTDNGFHEDDMPTNLAESDSEDDVPLVKFKFEVEEEPLGTEKKRKVKNEMRKPDCSEIILSKEEQLESLLARSRSSNYLHSPYKCNSCYKGFVDTTAYENHKMKHDLSSGPHICDICHMRYRSVQLMRTHASTAHARIFKCNKCGHVSHTSNQARIHEKWHDGHTYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDPADPTDPASKRFCVECNIQFYNSEAWKRHILRSVKHTLKTEESKSCSICQWQYAGHETLETHMKDHAKALRRRKPPATAKERSFRCNQCGSNFMTRSKLQAHTNRAHLGLKYNKNIVCEVCGKKCSSNATLKYHQRTHTGEKPYPCLSCSKHFVDSNQLRIHVRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANRKNKTKSVAQEAKVEKNCEEEGSLQTVRVFSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00042035;
90% Identity: iTF_00042890;
80% Identity: -