Acla043726.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940946.1:5478797-5482071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0015 0.19 13.7 0.2 1 23 47 70 47 70 0.97 2 22 1.5 1.9e+02 4.3 0.1 2 23 97 118 96 118 0.95 3 22 0.012 1.5 10.8 1.1 1 23 140 162 140 162 0.99 4 22 2.9e-05 0.0036 19.1 1.0 1 23 166 188 166 188 0.98 5 22 1.5 1.9e+02 4.3 0.1 1 23 193 216 193 216 0.84 6 22 0.14 18 7.5 0.5 1 23 222 245 222 245 0.90 7 22 0.25 31 6.7 1.3 1 14 252 265 252 267 0.92 8 22 1.5 1.8e+02 4.3 0.1 1 23 318 340 318 340 0.86 9 22 0.95 1.2e+02 4.9 0.1 3 23 366 387 364 387 0.89 10 22 0.00099 0.12 14.3 1.2 1 23 409 431 409 431 0.98 11 22 8.4e-06 0.001 20.8 0.1 1 23 435 457 435 457 0.98 12 22 0.0011 0.14 14.1 0.2 1 23 462 485 462 485 0.97 13 22 0.33 40 6.3 0.2 1 23 530 552 530 552 0.95 14 22 8.7 1.1e+03 1.9 1.4 2 23 576 598 575 598 0.92 15 22 0.00016 0.019 16.8 3.5 1 23 620 642 620 642 0.98 16 22 0.00026 0.032 16.1 0.4 3 23 648 668 646 668 0.97 17 22 0.009 1.1 11.3 1.4 1 23 676 699 676 699 0.92 18 22 0.027 3.3 9.8 0.6 1 23 705 728 705 728 0.94 19 22 0.37 45 6.2 1.3 1 23 734 757 734 757 0.94 20 22 4.6e-05 0.0057 18.5 0.5 1 23 763 785 763 785 0.97 21 22 1.5e-06 0.00018 23.2 0.6 1 23 791 813 791 813 0.99 22 22 0.00055 0.068 15.1 4.4 1 23 819 841 819 842 0.96
Sequence Information
- Coding Sequence
- ATGCGCAGGAGACGACGCGCGAACAACCAGCTCCCGGAAGAATCTGAGAAAAGAATATCCAAAACCATGATGCGTCGAAACGCAATGATCCTTCTCGAATATTCTACAGCCTGGGCCTTTAGATGGTTCCATAGCGCTTTCTACTGTTCCTACTGCGATGCTAAGTTTGTTGATGTACCGCTTCTCCGTTCACATGTTAAAATTAACCACCTGAATGATTTACCTACTGAAATAATCTTCTCGAAGTTGAAAGAGAACAATATGGTCAAAGTAGATGTAGCAGAGCTAAGTTGTAGATTGTGTAGCAGACTTCTGAATAGCATTGACGCCTTGAAAGACCATTTATTGATACATGGGAAGACTTTGAACGTAGAGTACAGTGATGGTGTCCTCCCATTCAAGTTGGATGAGGAAGGGTTCACCTGCCAACTTTGCTTCGCTCAATTTGTAACGTTCGCCAAAATGAACGAGCATATGAATACGCACTTTCAGAATTACATCTGTGATTCATGTGGGAAGGCTTTCGTTTCTAAATCGAGGTTTAGGAAACATGTGCAGTCCCATGAAACAGGGATCTTTCCTTGTGGAGAGTGTGGGGAAGTTTTGGAAACGCGAGCTGCTCGGATGTGTCATATAATGCGGGTACACAGAAAAGGGGTTCGCTATGCCTGCCCACGATGCCCTGGAGTCTTCACAACTTATCACACCAGAGCAAAACATTTAGTAGAATCACACGCCCAACAGAGAAAAGAATACTATTGCAATGCTTGCGATAAAACATTTGAAACAAGTTCTAAAAGAGCAGGGGCAATAGAAGACAGAGAAACGAGTGGTGAAAAGTCTACTGGAGTTTCTTGGAAGAAAAAACGCAGAGTAACGGAAGACAGAAAAAATGCAGCCTTTATTCTAGAACATTCGAATGCCGTAGTCTTCCGCTTGCATAGAGGCAAATTTCTTTGTGCATACTGCCCAAAAATATTTCTAAACGTATCTGAAGTACGGGACCATTCGGCAATCCACGTAAAACTTGATATATTCGAGAAACCTGCTGTGAGGAACACGTTTCCTTTACGAGTAGACATTACAAATCTTGCTTGTAATTTATGTggagaaaaaatacaaaatatagaaaaattAAAGACACATTTAGCTGATGAGCATTCTAAGTTTATTGACCAAAATTTTACGGATGGTATAGTGCCTTTTGTCCTGACTGGCAAGGAATATAGATGCGTCCATTGTAGCGAAGCTTTTGATAGACTTTTGGCTTTATTCAATCATATGAACCAACATTACCAAACGTATGTCTGCCCATCTTGTGGCAAAGGTTTTTCTGGACGTGACAAACTTCGAAGCCACTTAGCGACTCATGCATATGGACAATACAAGTGTTCCAAATGCGATTCTGTGTTCCCCAATCGTGCAGCGAAACAAAGGCATTTGGCGATGGCTCATGGACGAAAAGATAGATATAGGTggCCCGTAATTTGGACGAGGCTGAACCGCAAGTATAACGATCACAGAGACAATGCCGCTATCATTCTCGAAAGTTCCAACGCGTGCCCGTTTAGGTGGAGACGCGGCGCCTTCACTTGTGCCTCCTGCCCGCTCTCCTTCGGAGATTTCAGCGGTGTCAAAGAACATAGTAAAGAACACAAAAACTTCAGCGAAGCTCTACGAAAGGCTCGGCCGTTTTCTAACCTCAAAATTGAAGTCACTGAACTGCGATGCGAGTTGTGTCTCACTAGAATGACAAGTTTAGACACACTTTGCGATCATTTAGTTAAGAATCATAATAAACCAATAATCACTAAGAATGGTATAGGAGTTACTCCGTACTATCTGACAGGAAAAGAGTTTAGATGCACTCATTGTGATGAAACTTTCGTCCTTTTCTCGAAATTGAACTCGCATATAAACAAACACTATCCAAATAGCATCTGTTTTCAATGCGGCAAAGCGTTCTCCTCTCTGCCGAGGTTAAAATCTCATCTGCTAACCCACGATTCGCCAGCCATTACCCAATACAACTGCACTAAATGTGACCAAACCTTCGCCACCCGTGTCTTGAGAAATAATCACGTAAGTCAGAAACACGGTCCTGAATACAGGTACAGGTGTCCTTACTGCAAAGATTCGTTTAAAAGTTACGCAGATAGGGGCAAGCATTTGAAAGCCgcacacgataaaaaaatcgaATACCCTTGCAGCTTATGCCCAGCTGTTTTTGCGATGTGTAATCAGAGGACAAAACATTTCAAGCAGGTTCATGTGGGCATAAAGGCGTTTGCTTGCGAATTTTGCTCGTACAAATTCGTGACTGCTGCACAATTAAGAAATCATATGATCAAGCATGGTGGCGAAAGAAAATATCAGTGCCAAGTTTGTAAAAAGGCGTATGCTAGGGCCAAAACTCTTCGAGAGCATATGCGGATACATAATAATGATAAGCGATTTGTCTGTGAGTATTGTAACTCAGCTTATGTCCAGAAATGCAGCTTGCAAAGTCATTTGCGGACGCATCATCCCACAGCTGAGCCTTTGAAGAAGGTTAAGCTACCTCATATGAGTTATTAA
- Protein Sequence
- MRRRRRANNQLPEESEKRISKTMMRRNAMILLEYSTAWAFRWFHSAFYCSYCDAKFVDVPLLRSHVKINHLNDLPTEIIFSKLKENNMVKVDVAELSCRLCSRLLNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFVTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHETGIFPCGECGEVLETRAARMCHIMRVHRKGVRYACPRCPGVFTTYHTRAKHLVESHAQQRKEYYCNACDKTFETSSKRAGAIEDRETSGEKSTGVSWKKKRRVTEDRKNAAFILEHSNAVVFRLHRGKFLCAYCPKIFLNVSEVRDHSAIHVKLDIFEKPAVRNTFPLRVDITNLACNLCGEKIQNIEKLKTHLADEHSKFIDQNFTDGIVPFVLTGKEYRCVHCSEAFDRLLALFNHMNQHYQTYVCPSCGKGFSGRDKLRSHLATHAYGQYKCSKCDSVFPNRAAKQRHLAMAHGRKDRYRWPVIWTRLNRKYNDHRDNAAIILESSNACPFRWRRGAFTCASCPLSFGDFSGVKEHSKEHKNFSEALRKARPFSNLKIEVTELRCELCLTRMTSLDTLCDHLVKNHNKPIITKNGIGVTPYYLTGKEFRCTHCDETFVLFSKLNSHINKHYPNSICFQCGKAFSSLPRLKSHLLTHDSPAITQYNCTKCDQTFATRVLRNNHVSQKHGPEYRYRCPYCKDSFKSYADRGKHLKAAHDKKIEYPCSLCPAVFAMCNQRTKHFKQVHVGIKAFACEFCSYKFVTAAQLRNHMIKHGGERKYQCQVCKKAYARAKTLREHMRIHNNDKRFVCEYCNSAYVQKCSLQSHLRTHHPTAEPLKKVKLPHMSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726707;
- 90% Identity
- -
- 80% Identity
- -