Basic Information

Insect: Agrotis clavis
Gene Symbol: clz9
Assembly: GCA_954870645.1
Location: OX940945.1:1687932-1690670[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.8e-08 6.8e-05 23.9 0.0 2 37 8 43 7 47 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.8e-08	6.8e-05	23.9	0.0	2	37	8	43	7	47	0.89

Sequence Information

Coding Sequence: ATGACTGAAAGAAACTACAAGCAAGAGGACCttttaaaagccatagaagCTGTAAATCAAGGGGCCACAACATCAGATGCAGCAAGAAAATTTAAAGTGCCAAGGACCACATTAAATGACAAGATTAAAGGGCGTAGTTTAGTCGGCTGCTCTAAAGGACCAACGACTGTTTTAACTCCGGAAGAAGAAGAACATTTAAAGAACTGGTTAATTTTCATGGCAGAAAGTGGTTTTCCTGTAACATCAGATCAGTTATTAGATAGCGTTAAATTATTAGTTACAAAATTCAAACGTAGTAACCCATTTACTAACAATAGACCAGGTCGACATTGGTTCGAGTCATTCATAAAGCGTCACCCTGAAGTGGGTCGAAGGGTGTCCCAAAATTTGACACAATCTCGAGCATTAGTCACGGAAGATGATGTTCGTACCTGGTTCAAAGAAGTTAAGGATTATTTTTGTACTGCTCAGCTACAGGCAACTTCTGAAGACCCGCGGAGAATTTTTAACTGCGATGAGAGCGCCTTTTTCTTGTCCCCCGCTGACAACCGAGTCTTAGCGAAACGTGGGtctaaaaatgtttacaatatAATACCAAGTGGAGAAAAAGAGTGCGTAACAGTTCTACTAACAGCTAATGCATCAGGTGAATTGGCACCGCCGATGGTTCTTTTTAAACTTAAGTCAATCCCTCACAAAATTTCGAAATCAGCACCTAATGATTGGGGATTAGGGCACACAAAAAGAGGCTGGATGACTGGCGAAGCCTTTTATGAATATATAGCAAATGTGTTCTACCCTTGGGTTATAAGAAGTGGCATCCAGCTGccgataatattttatttggatGGCCACTGCTCTCATACCACGCTACCATTGAGCAATTTCTGTAGAGAAAATCAAATTATACTCATCGCGCTCTATCCAAATGCTACACATATTCTTCAACCCATGGATGTAGCAGTATTTAGGCCTCTCAAAAGAATATGGAAACAATCTGTATATGATTGGCGCAATGAGAATCACTTTGTAAAACTAAAAAAGGAAAATTTCTGTCCCTTGTTAGACAAGACTCTCAAACAATTAAACAGAAACTCTATTGTAAATGGATTTCGTAAATGTGGGCTGTCACCATTTGATGTTAATAACGTCGATTATACTAAATGTGTCACCAAAAAGTTAAGCCAGTCCACCCAGAAAACAAAAACAGCTGATAAAGTTTCCTTGTCCGACAAACTTAATCACATAAAATTTTTTGAATCTCAGATCAGTCCCAGGACACTAAAAACTTTCCATGATAATAGAATGTCAACATGGAATGGTGAAAAATCGTTGGAGGGATTGTTCAATGTCTGGAAGTCTATGGTTACTCAATTTTCCACTAGTTCTGAAGACGACTGTGATAAGGAGAATACAGGTATCGAAAACGCAAATATGCAAGAAACCTTTCCTATTAGTAATAGAGTTGAAGATAATTTTAGTAATTATACGATTGGCGATTTTAGATTAAGTGAAATAATGGACTATTCGTTAAACGATGTTCCCGAATTTAATTTCACAAATAAATCGGAAACTGAAGGAAaggtagaattttatgaagttGTTAATGGAACACTTAACCAAATAAATCCTCAATCATCTGTCACAAACGACACAGAAATGCCAGTATTTTTAGAGCAGATGCCAAATTTTGAATTACACCAAACAACACCTCCAGTCATCCCAATAGGGGATATAATTCGGACAACAGGTTCAAACCCTATTTATTTAAAGCCTCGCAATACAAATCCTCAATCATCTGTGACAAAGAACACAGAAATGCCAGTATTTTTAGAGCAGATTGGAAATTTTGAATTACACCAAACAACACCTCCAGTCATCCCAATAGGGGATATAATTCGGACAACAGGTTCAAACCCTATTTATTTAAAGCCTCGCAATACAATTAAAACTAATGTAACATCGACGGTAACATCCACTTCCATATCAAGCACTTTTTCTGGAATTTCGGAAACCACACCTCCACATGGCGACACAAATTTTACACCAACCATGTCGCAATCACAACCACCTCAAACTATATATTTGACGCCTCGCAGACAATTATCGCCTATTCCATGTCACAAAATCACATATCCTGCACCTTCCATAAAAAAACCAAAAGTGACTTCGACAGTTACATCATATTCCATGCCCGTAACTGTTGCGGGAATTATGAATAACACGACACAACACGATGGAACAGATTGCAATTTAACCGAATCACAGCCACAGCCAGCTGCTAAGATGTGCTGTGATAATCTTACGATACCAACGCCTTTTAAAGATGTTTTATTTTGGCCACCACCTCAACACCAGACCCCACAGACATccataccaaaaataaaaaagcccaGTGTTATAACCTCAGACCGGTGGCAAATCTTCGAACAACGAAAGATCGATGCCAAGACCGAAAAGGAAGAGATAAAGAAGAAAAGAGTCGAAACAAGAAAAATTGGGAAAGCTAAAAGAGCGCAGACAGCAGGACGCAATAAAACGAAAAAAGAAAGCAATAAAACAAGCATTTCGGTGCAAGAAGCCAAAAACGAAGATTGGTTCTGTCGATTGTGTCAAACAAGTGCAGAAATGGATATGATACGATGTCTTACTTGTTCAATCTGGTACCATACAACTTGTGCAGAAATAGATCCAACAGAGAAAATATTTCATTGTGTCTATTGCATCGCccagacataa
Protein Sequence: MTERNYKQEDLLKAIEAVNQGATTSDAARKFKVPRTTLNDKIKGRSLVGCSKGPTTVLTPEEEEHLKNWLIFMAESGFPVTSDQLLDSVKLLVTKFKRSNPFTNNRPGRHWFESFIKRHPEVGRRVSQNLTQSRALVTEDDVRTWFKEVKDYFCTAQLQATSEDPRRIFNCDESAFFLSPADNRVLAKRGSKNVYNIIPSGEKECVTVLLTANASGELAPPMVLFKLKSIPHKISKSAPNDWGLGHTKRGWMTGEAFYEYIANVFYPWVIRSGIQLPIIFYLDGHCSHTTLPLSNFCRENQIILIALYPNATHILQPMDVAVFRPLKRIWKQSVYDWRNENHFVKLKKENFCPLLDKTLKQLNRNSIVNGFRKCGLSPFDVNNVDYTKCVTKKLSQSTQKTKTADKVSLSDKLNHIKFFESQISPRTLKTFHDNRMSTWNGEKSLEGLFNVWKSMVTQFSTSSEDDCDKENTGIENANMQETFPISNRVEDNFSNYTIGDFRLSEIMDYSLNDVPEFNFTNKSETEGKVEFYEVVNGTLNQINPQSSVTNDTEMPVFLEQMPNFELHQTTPPVIPIGDIIRTTGSNPIYLKPRNTNPQSSVTKNTEMPVFLEQIGNFELHQTTPPVIPIGDIIRTTGSNPIYLKPRNTIKTNVTSTVTSTSISSTFSGISETTPPHGDTNFTPTMSQSQPPQTIYLTPRRQLSPIPCHKITYPAPSIKKPKVTSTVTSYSMPVTVAGIMNNTTQHDGTDCNLTESQPQPAAKMCCDNLTIPTPFKDVLFWPPPQHQTPQTSIPKIKKPSVITSDRWQIFEQRKIDAKTEKEEIKKKRVETRKIGKAKRAQTAGRNKTKKESNKTSISVQEAKNEDWFCRLCQTSAEMDMIRCLTCSIWYHTTCAEIDPTEKIFHCVYCIAQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043432; iTF_01264561; iTF_00039742; iTF_00039743; iTF_00039744; iTF_00667393; iTF_00667391; iTF_00667392; iTF_00667394; iTF_01085132; iTF_00711800; iTF_00667389; iTF_00667390; iTF_01084199; iTF_01084197; iTF_00667387; iTF_00667388;
90% Identity: iTF_01084199;
80% Identity: iTF_00043432; iTF_00039742; iTF_00039743; iTF_00039744;