Alyc040208.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796875.1:7802101-7814669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0018 0.23 13.4 2.1 1 23 314 337 314 337 0.98 2 10 0.26 32 6.6 1.7 3 23 346 366 344 366 0.96 3 10 0.0002 0.025 16.4 0.4 2 23 402 424 401 424 0.96 4 10 6.6e-05 0.0082 17.9 1.1 5 23 429 448 428 448 0.96 5 10 5.2e-06 0.00065 21.4 2.0 1 23 454 476 454 476 0.97 6 10 5.3 6.7e+02 2.5 0.4 2 22 486 506 486 510 0.89 7 10 4.1e-05 0.0051 18.6 2.9 1 23 514 537 514 537 0.91 8 10 0.0017 0.21 13.5 1.1 1 23 543 566 543 566 0.95 9 10 0.0002 0.024 16.4 4.4 1 23 574 596 574 596 0.97 10 10 0.00017 0.021 16.7 0.2 1 23 602 625 602 625 0.96
Sequence Information
- Coding Sequence
- atggaaGAAACATTAAATATATGCCTGACATGTCTAAGCATGGACCGCTGCCTCGTTCCTTTGCATAAAATAAGAATGTTACTCCAAGAAATACATTTCGCAGagTTGAAAGAGTTCCACGGTGGAGTATGTTGGGAATGCTGGAGTATCCTGGCCAAGTTTTATAGATTTAAGAAAAAAGCTAAGCTAGCACAAGAGACCTTGTCACGAACTACAAAGCATTTCAATATAAAACCGTTAACAACATTGACATCAAAAACCAGTGTCTTCTATGACTACCAGTACACCTATAGCTCGGATCCTTTATCCTACTGCAACACAAAACTAAAAGCTGAACTAGATTCTATAAAACAAGAAAGCATAGACCAAagtgaaaacataaataacaatTCAGATTTTGTTGAAAAAAGAACAGATTTTGATAAAGAAGAGGAAATTGTCTTTGATAATGTAATAGAAACAAAACACGATGTTAATTTACTAAGAAAACACGAAATTAAAGACCATATAGcatatgatgatgataatatagaCAATACttcagatttagatgaaaaaacTTCAGACTTTGATGAAAAATTGTCTGACATACctgaaaaaattgaaaaagtttaTGTAGATGTGGTTGAAAATAAACACAATCGTAATTTGTTAagtaaaaaaagattttctcaATATGAAAATAGAGTTAAAATTAACTTTGCCAAAGTAATTTTTAGTGAAACCGATGTAAGACTTAGTGAATCAACCGAAAATGTTTATGTAAAAAAGATTGAAAAAGAAGGCAACAAACatttaagaaaaagaaaagttaaAAGAGATATAGAAAGAGATGTTGAAGAGTTCCAAGAGAAGTTTGTACGAGTTGTATTGAGTGAAGAAGAGATGCTTAAAGCAAGAGAAGGGAAGAGAGATCatcataattttaaaaagcTTCCTTATAAATGTGATAGTTGTGTACTTGGCTTTACAAGGAAGGATACTTATAGTTTACATATGAAGAAGAAACATGATGAGAGCATTGGCGACCAAATCTGCGATGTATGCAGCATCCGTTTACGTCACAAACTAGCTTTGAACAACCATAAGAGCAAGCACTATGTAGTGTACAGGTGTCGACTGTGCAAATATGAGGCTCATGAGTTTATGTCAGCGGTGAATCATTGCAAGACTAAGCATGCAGCAGACAAGCCTGATAGCATACATTGTTCACAGTGTAGTGTTGTGGTCAAAACCCCAGACGATTTAGAAAAACACATGCAGACGGAACATTCCCTTTTCTGTGACTGCGGAATCAAATTCAAAGACAAGAACAATCTTAGAAGACATATGAGccGGGCGCACTCCGTACTACGCAACTTTGTATGTGATATTTGCAAGAAAACTTTCAAAACTAAGACGCGGCTAGAAACCCACATGGTGAGGCATAGCGGCAATATTGCCAAGAAGCTGGCATATTGCCAACAGTGCAATGTACAGTATAAAAATATACAGGTCTATAGGATTCATTTGAAGTCTAGTGCTAATCATTCAGAGGGCTATCCATGTTCAGAGTGCAATAAGAAATTCAGGTCGAAAGGATATTTAAAGCAACACTATGACTTCTATCATTTACGAAAGTCGCAGTATACATGTGAAGTATGCAATAAgCTTTTCATATCAAATTGGCGTTTACGTAATCACAAACAACTGTACCATGGTCTGAGTAGACCTAGAAATCATTCCTGCAACACATGCGGCAAGAAATTCTTTACTTTAGCAACGCTTCGTAGTCATCAGTTCACACATTCAGACCAGCGATCGTTCATGTGTGAAGACTGTGGCGACACTTTCAAGCAAAGCGCTGCCTTGTACACACATACGCGGCTTGTGCACAAAGGTGGAGGGGCACGGAAGAAGCGCGACTGTTGA
- Protein Sequence
- MEETLNICLTCLSMDRCLVPLHKIRMLLQEIHFAELKEFHGGVCWECWSILAKFYRFKKKAKLAQETLSRTTKHFNIKPLTTLTSKTSVFYDYQYTYSSDPLSYCNTKLKAELDSIKQESIDQSENINNNSDFVEKRTDFDKEEEIVFDNVIETKHDVNLLRKHEIKDHIAYDDDNIDNTSDLDEKTSDFDEKLSDIPEKIEKVYVDVVENKHNRNLLSKKRFSQYENRVKINFAKVIFSETDVRLSESTENVYVKKIEKEGNKHLRKRKVKRDIERDVEEFQEKFVRVVLSEEEMLKAREGKRDHHNFKKLPYKCDSCVLGFTRKDTYSLHMKKKHDESIGDQICDVCSIRLRHKLALNNHKSKHYVVYRCRLCKYEAHEFMSAVNHCKTKHAADKPDSIHCSQCSVVVKTPDDLEKHMQTEHSLFCDCGIKFKDKNNLRRHMSRAHSVLRNFVCDICKKTFKTKTRLETHMVRHSGNIAKKLAYCQQCNVQYKNIQVYRIHLKSSANHSEGYPCSECNKKFRSKGYLKQHYDFYHLRKSQYTCEVCNKLFISNWRLRNHKQLYHGLSRPRNHSCNTCGKKFFTLATLRSHQFTHSDQRSFMCEDCGDTFKQSAALYTHTRLVHKGGGARKKRDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173526;
- 90% Identity
- iTF_00037366;
- 80% Identity
- -