Alot019896.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376247.1:6834731-6838163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0031 0.23 12.4 0.2 1 23 76 99 76 99 0.95 2 20 1.3 98 4.2 0.1 2 23 126 147 125 147 0.95 3 20 0.83 63 4.8 1.3 1 23 169 191 169 191 0.97 4 20 2.5e-05 0.0019 19.0 1.0 1 23 195 217 195 217 0.98 5 20 0.89 68 4.7 0.2 1 23 222 245 222 245 0.88 6 20 0.01 0.77 10.8 0.6 1 23 251 274 251 274 0.90 7 20 0.0007 0.053 14.5 0.5 1 23 281 304 281 304 0.97 8 20 0.013 1 10.4 0.1 3 23 413 434 411 434 0.92 9 20 1.7e-05 0.0013 19.5 0.2 1 23 482 504 482 504 0.98 10 20 0.0071 0.54 11.3 0.1 1 23 509 532 509 532 0.96 11 20 0.0098 0.74 10.8 0.1 1 23 580 602 580 602 0.97 12 20 5.3 4e+02 2.2 2.6 2 23 626 648 625 648 0.93 13 20 5.7e-05 0.0043 17.9 3.5 1 23 670 692 670 692 0.99 14 20 0.0026 0.2 12.7 3.3 2 23 697 718 696 718 0.95 15 20 0.0055 0.42 11.6 1.9 1 23 726 749 726 749 0.92 16 20 0.008 0.61 11.1 0.7 1 23 755 778 755 778 0.97 17 20 0.056 4.2 8.5 0.7 1 23 784 807 784 807 0.96 18 20 5.8e-05 0.0044 17.9 0.8 1 23 813 835 813 835 0.97 19 20 3.1e-06 0.00023 21.9 0.8 1 23 841 863 841 863 0.99 20 20 0.00013 0.0097 16.8 5.2 1 23 869 891 869 892 0.96
Sequence Information
- Coding Sequence
- ATGCCAACGAGTTCCGCTCACGAAGCGGAGAGGAATCTAGGCGTTAGACGCATTAGGAAGTTGAAGGAAAACGTTAGCGATCGCCAGATGCGAAGGCGACGACGCGCCAACAACCAGCTCCCCGAAGAATCGGAGAAAAGAATATCCAAAACCATGATGCGTCGAAACGCAATGATCCTTTTAGAATGTTCGACAGCCTGGGCCTTTCGATGGTTCCATAGCGCTTTTTACTGCTCATACTGCGACGCAAAGTTCGTCGATGTACCTCTTCTTCGCTCACATGTCAAAGCTAATCATCTGAACGACTTCCCCACTGACAGAATCTTCTCGAAGTTAAAAGAAAATAATATGGTCAAAGTCGATGTAGCTGAGCTTAGCTGTAGGTTGTGCAGCAGGCTTCTAAATAGTATTGACGCTTTAAAAGATCACCTATTGATACATGGCAAGACTTTGAACGTAGAATACAGTGATGGGGTCCTACCTTTCAAGTTAGACGAAGAAGGCTTCACATGCCAGCTGTGTTTCGCCCAATTCCTGACTTTCGCCAAAATGAACGAGCATATGAATACACACTTTCAAAATTACATTTGCGATTCTTGCGGAAAAGCTTTCGTTTCAAAATCAAGATTTAGAAAACACGTACAGTCACACGAAAAGGGGAGTTTCCCTTGCGGGGAGTGTGGTGAAGTTTTAGAAACACGAGCGTCTCGAATGTGTCATATAATGCGAATCCATAGAAAAGGCGTTCGCTACGCTTGCCCGAGATGCCCCGAAGTTTTTACAACCTACCATACGAGAGCAAAACATTTAGTAGAAACCCACGCCCAACAGAGAAAAGAATACTACTGTAATGCTTGCGACAAAAGTTTTGAAACGAGCTCCAAAAGAGCAGGACATATACGTGTAACTCACGCGAATGTTGAGAAACGACACTTCTGCCCTAACTGGACGATAGAAGAAAAAGAAATGGCAGCAGAAAAGTCCACTACAATAGTTTGGAAGAGAAAACGGCGAATTAAAGAAGACGCAGCAAATGCAGCTATTATAATAAAACACTCGAATGCAGTAGTATTCAGATTGCATAGAGGCAAATTCATGTGCGCTTACTGCCCAAAGATATGTTTAAACGTACCGGAAATTCGAGAACATTCAATTATTCATGAGAAGCTCGAAATATTCGAGAACCCTGCTGTGAGAAACTCGTTTCCTCTTCGAATCGATATCACAGATTTAGCATGTAGTTTATGCGGTGAAAGTTTACAAAATATAGACAATTTGAAGACACATATAGCAGAGAAGCATTCACAGATGACTGACCCGGATTTTTCAGATGGTGTCATACCATTCGTGTTAACTGGCAAAGAATACAGATGCGTCCACTGCAGCTTACTATGTGAAGGTTTCATGACTTTATTCACGCATATGAACCAACATTACCAAAGCTATGTGTGCCCTTCATGCGGCAAAGCATTTTCGGGACGCAACAAGCTTCGTAGCCACCTCGTCACCCACGAATTTGGACAGTTCAATTGCCCAAAATGCGATTCGATATTCCCTAATCGTGCTGCGAAGAACAGGCATTTGGTCACAGCTCATGGAAGAAAAGACAGATATAGGTGGCTCGTCGAACTCAAAGTAAAATGGAGGCCGACACGCAAGTATAACGATCACAGAGATAATGCCGCTATCATTCTCGAAAGTTCCAACGCTTGTCCTTTTAGGTGGAGACGAGGGGCCTTCACTTGTGCGTACTGTCCGCTCTCCTTCGGAGATTTCAGTGGTGTAAAGGAACATACTATAGTACACCCTAACAGGATCGAGGCCCTCCGTAAGGCGCGACCGTTCGCAAACGTCAAAATGGAAGTTACTGAGCTACGATGCGAATTATGTCTCATGCGAATGACGAGCTTAGATCATCTTTGCGAACACTTACTCCAAAATCATAACAAACCAATAATTAATAAACATGGTATAGGAGTCACGCCTTACTATCTAACAGGGAAAGAATACAAATGCACTCATTGTGACGAAACATTTGTTCTTTTCTCTAAATTGAACTCACATTTGAACACGCACTATCCAAATTGCATCTGTTTCCAATGCGGTAAAGCATTCTCGTCCGTGCACAGGCTGAAATCCCATTTACTCATCCACGATTCTGCACCCACAGCCCAATTTAAATGCACTAAATGCGACCAAGTTTTCGCCACACGTGTCTTGAGAAATAATCATACAACCCAAAAACACGGCCCAGAATTCAGATACAGGTGTCCTTACTGCAAAGATACTTTCAAAAGCTACGCTGACAGAGGAAGGCATTTGAAAGTGGCGCACGACAAAAAGATCGAGTATCCCTGCAATTTGTGTCCAGCAATTTTCGCGATGTGTAATCAAAGGACCAAACATATAAAACAAGTTCATATGGGAATTAAATCATTCGCGTGCACTTTTTGCTCGTACAAATTCGTGACAGCTGctcagttaaggagtcatatgataaaacatggaggggagaggaaatatcaatgtgaggtgtgcaagaaagcgtatgctaggaccaaaactttaagggagcatatgaggatacataataatgataagagatttgtttgtcagtactgtaatactgcgtatgttcagaaatgtagtttgcaaagtcatttaagaacacaccatccTACAGCAGAGCCTCTAAAAAAGACTAAGATATCTAATCTGTATTAA
- Protein Sequence
- MPTSSAHEAERNLGVRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSAFYCSYCDAKFVDVPLLRSHVKANHLNDFPTDRIFSKLKENNMVKVDVAELSCRLCSRLLNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECGEVLETRASRMCHIMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYCNACDKSFETSSKRAGHIRVTHANVEKRHFCPNWTIEEKEMAAEKSTTIVWKRKRRIKEDAANAAIIIKHSNAVVFRLHRGKFMCAYCPKICLNVPEIREHSIIHEKLEIFENPAVRNSFPLRIDITDLACSLCGESLQNIDNLKTHIAEKHSQMTDPDFSDGVIPFVLTGKEYRCVHCSLLCEGFMTLFTHMNQHYQSYVCPSCGKAFSGRNKLRSHLVTHEFGQFNCPKCDSIFPNRAAKNRHLVTAHGRKDRYRWLVELKVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGAFTCAYCPLSFGDFSGVKEHTIVHPNRIEALRKARPFANVKMEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIINKHGIGVTPYYLTGKEYKCTHCDETFVLFSKLNSHLNTHYPNCICFQCGKAFSSVHRLKSHLLIHDSAPTAQFKCTKCDQVFATRVLRNNHTTQKHGPEFRYRCPYCKDTFKSYADRGRHLKVAHDKKIEYPCNLCPAIFAMCNQRTKHIKQVHMGIKSFACTFCSYKFVTAAQLRSHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCNTAYVQKCSLQSHLRTHHPTAEPLKKTKISNLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726707;
- 90% Identity
- iTF_00726707;
- 80% Identity
- -