Basic Information

Insect: Agrochola lota
Gene Symbol: ham
Assembly: GCA_947364205.1
Location: OX376237.1:12448500-12469809[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.029 2.2 9.4 0.0 2 23 140 162 139 162 0.96

2 9 0.0008 0.061 14.3 0.8 1 23 169 192 169 192 0.93

3 9 1.7e-08 1.3e-06 29.0 0.1 1 23 198 221 198 221 0.96

4 9 1.5e-06 0.00011 22.9 1.7 1 23 227 249 227 249 0.95

5 9 5.2e-05 0.0039 18.0 6.1 1 23 255 277 255 277 0.99

6 9 0.00023 0.017 16.0 0.4 2 21 285 304 284 305 0.94

7 9 1.2e-08 9.4e-07 29.4 0.7 1 23 702 724 702 724 0.98

8 9 4.5e-07 3.4e-05 24.5 1.7 1 23 730 753 730 753 0.97

9 9 1.7e-05 0.0013 19.5 3.2 1 23 759 781 759 781 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.029	2.2	9.4	0.0	2	23	140	162	139	162	0.96
2	9	0.0008	0.061	14.3	0.8	1	23	169	192	169	192	0.93
3	9	1.7e-08	1.3e-06	29.0	0.1	1	23	198	221	198	221	0.96
4	9	1.5e-06	0.00011	22.9	1.7	1	23	227	249	227	249	0.95
5	9	5.2e-05	0.0039	18.0	6.1	1	23	255	277	255	277	0.99
6	9	0.00023	0.017	16.0	0.4	2	21	285	304	284	305	0.94
7	9	1.2e-08	9.4e-07	29.4	0.7	1	23	702	724	702	724	0.98
8	9	4.5e-07	3.4e-05	24.5	1.7	1	23	730	753	730	753	0.97
9	9	1.7e-05	0.0013	19.5	3.2	1	23	759	781	759	781	0.98

Sequence Information

Coding Sequence: ATGACACGGACTAATAGCGCCATCTATTGCGGTGTCGCGGTGTCCGTCGGCTTGTCAGTTGTTGATAGAGGGCGAGAGATGGCGCCACGAGTCGCGTTTGATGGAATGGTTTATTTTGTCCGAGATAAGAATGGTGTCAGTGGCTGGTTGGACGCCACTTCAGAGAAGGGCAACTGGCTCAAAATGGTGCGCTCCACCAACTACCCCCACGACGTCAACGTACAACATCTTTTATCGGGTGGACAGGTGTGGTACAAGGTTGTCCGGGAGGTACCCTCCGGTCAGGAGTTGCTGCTGGGTCCTCGAACACCTATCTACTTGGATGACGTGCTCTCTTTGGACAAGCGTCAGTCATCTATTGAGAAGTTCAGTTCTCTGGCGTCAGCTGACGACGAGGAGAGAGAGGACGCCGATATCCGCTGCAGCTTCTGCGATCTACCCTTCCCTAATATCGATGTTCTCGATCGGCACTTGATAACGGAGCACGCCCAGCCAGCCGCTGCATTTCATTGCGAACTCTGTAACAGAGCTTACAGCACTCGGGTACTGCTCCTGCGACACCGTGCGCTTGCGCATACAGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCGCAGCACGCGGGAGCCCGCAGCCACGCCTGTCCTGAGTGCGGGAAGACCTTCGCTACCTCCTCCGGCCTGAAGCAGCACACCCACATACACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACGCAGTTTTCCAACCTGTGCCGTCACAAGCGGATGCACGTCGCTTGCAGAGCACTCGTTGAATGCGGAAAATGCGGCCAGTCCTTCAACTCTTACGCCTCTCTTACTAAACACAAGAGATTCTGTGACACCGCTGCGGCCGCTTCAGTTAATCTCCGAGGGCAAATGCCCCAAGGTTTACCACAAATACCATCACTACAAAACGTCGGGATGAATAACCCTAACAACACGAACCCGTTCCCGATGTACAGGGGACCCACCCTGCCACTGCCATACAATACATTTGCTCACTACCCGGCGCTGTTCTCTGCCGCCGCTGCTGCTGCCTGCCCACCAGAGTTCCTAAGCCCATTGCTCTTCAACGTGCAAGGGGCAAGACTCGCTATGGAACATGACATGGCCATGTCTAATGCTAATTTAGTATCCAAGCAACAGGAAGGCCGATTATCAGTAAAAAGCATGGACAGCTCAAATTCTTTAGATGATAACAAGAAGCCTAAGGATTTAGATTTCGAAAACAAAAGAGACAGCTATAGTTCAGATAGGGCTACGCCCAATAAATCACATTGTCTTTATTCTAAGCAATCACCTCCTTCCGGGGAGGAAGCATCTTCTCAACGCCGACCGTCACCAGTGATGCCGCTGCCTACACCGATTGCTCCATTCAGTTTCTCAAGAGATGAAATGAAGCGCAAGTCTCCGTTCAACTTCTCTCTCAAGCTGAATAATAATAACATTCAGGGTAACAAGTCTCTATCACCATTACCCAAAGACTTATCCAAGAATGTCATCGAAGACGATAAAACTTCTGAATATTCTGATGTAGAAGAAGATACAAAAAAAGATGATGGTGACCAGCCTTTAGATCTATCAGTATCAAGGAAACAGCACAATAAGGATTCTGAAGCAGACGATGATGATCGTTCCTTTCGCAACTCAGTCAAGTCTTATTCACCTCCTGAAAGCCCAGCTGAGAGGAGTAAGACTCCGGAAAACGACACGACAGACGTCGATGTTGAAGGCGTAGAACCTAAAAGAGAGGAATCACCACCGCAGCTAGTATCACCACCTTTGGCGTTCCCCATGCCCGTTCACCCGCAGCACAGCAACTTAATCGATGCCATGTACCGGCCTCGATTCCCATCGTTCCACACTTCCGAATCCCTTCTAAACTCGTCGCACTCTCCGTATGTTCCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGACAGGCAACAAAGCGCGTATGCCAAGTTTCAAGAGCTTAGTTCAGGGTCAGGAAAGCTACGTGATCGGTATGCTTGCAAGTTCTGTGGAAAAGTATTCCCGCGGAGTGCGAACCTGACTCGTCACTTACGTACACATACTGGTGAGCAGCCTTACAAGTGCAAGTACTGCGAGCGCTCGTTCTCGATCTCGTCGAACCTTCAGCGGCACGTGAGAAACATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAAAGATGTTTCGGGCAGCAGACGAATCTCGATCGTCACTTGAAGAAGCACGAGGCGGAAGGTGGAGATTCTCCTAGCTCTGCGGATACTGAGAGGGAGGATGCGTATTTTGATGATATTCGGTCATTCATGGGTAAAGTGACGTGTTCTCCGGGAGCGCGCTCTCCGGCAGCGACGCCCCCCCACGGGGCGCACGCGGCGCACGCGGCTCACGCGGCGCACGCGGCCCACGCGGCGCACGGGGCGCACGCGGCGCACGGCCCGCGCCCCTCGCTCGCTATCTCCACATAG
Protein Sequence: MTRTNSAIYCGVAVSVGLSVVDRGREMAPRVAFDGMVYFVRDKNGVSGWLDATSEKGNWLKMVRSTNYPHDVNVQHLLSGGQVWYKVVREVPSGQELLLGPRTPIYLDDVLSLDKRQSSIEKFSSLASADDEEREDADIRCSFCDLPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFNSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQIPSLQNVGMNNPNNTNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFENKRDSYSSDRATPNKSHCLYSKQSPPSGEEASSQRRPSPVMPLPTPIAPFSFSRDEMKRKSPFNFSLKLNNNNIQGNKSLSPLPKDLSKNVIEDDKTSEYSDVEEDTKKDDGDQPLDLSVSRKQHNKDSEADDDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQQSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHAAHAAHAAHAAHAAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441779;
90% Identity: iTF_00177403;
80% Identity: -