Alot018462.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- clz9
- Assembly
- GCA_947364205.1
- Location
- OX376219.1:24855591-24858839[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-11 1.5e-08 34.6 0.1 4 40 18 55 15 59 0.85 2 2 2.6 8.8e+02 0.2 0.0 23 38 988 1004 987 1008 0.81
Sequence Information
- Coding Sequence
- ATGGTAAGCAattacaaaagaaaaacaaacaaaggatcatattcgaaacaaaaattacaagaagcagcagaagctgttagaaatggccatctgagtggctataaagctgcgcaaatttataatattcctcgcatgactattatggaccatgtgaaaaacaggagatttaaatccaattctcttggcagaagcactgcgctgactttggaagtcgaaacaaaattagcttcgttactacatttaatggaaaaatatggtttcggtttgaccaaaaaagaggtcctagaaatggttggccagtatgtaaaccgtaatctcatatcgacgcctttcaaaaatggagctccagggcaggcgtggtttactgcattcaaaaaacgacatcatttttccgtgaagaaaccccaggcagtggaatacgcgcgtaagaaagccgtagacccatttatagtttacccatattttgaattgcttaataatacattgaaagaattaaatttattgaatcaaccagccgccatttggaatttagacgaaactagtttttcgaatgatcccaaaaaatcaaaaattgttggcatgaaaggacacgccgcgacaagagtcatttcctcgcctggtagagaaaacactactgttttgcttggcgccagtgcattaggacaaaaaacacccccactaataatttttaagggcaaaaacgtttgggatgaatggacatctccgtatgcttatcccggcacatcctacgctgctacaaaaaaaggatggatggagaccgacgtctttgaaatgtattttaaaaaagtttttttgccagctgttggagatcaacgtccgattcttcttatttatgatggacacgctactcatgtaggattaaatataatcgaggaagcgcgtaaagcagatataacaatacttaaactacctccgcatactagtcacatattacaaccgctggatgtagcggtcatgaaatcatttgaagatcggtgggatccaatgctcgtaaaatggcagcgttcaaatatcggagtgaagctcccaaagaaagagtttgcgaggttaattggagtggtttgggctcaaattgatagtcaagttttaagaaatggcttccgcaaggctggaatttacccgttcaaTTCTGAAGAAATCAAAGAAAGTCTGTTTGATTCGTTACAGCTAAGACGTTGGAAAGAACTCAAAGTTCTTAAGTCCCAAGAACGACATGAATATGACCACAATAATCAAGAAAGACTCGTTTGTTACAATGACGAATCTTTGTACGTTGCTACAACATACGAGCCACAAAGTTTGCTTTCGTTAGCCTTAAATTGCACCATACAAGTAATTGGCATTAATTCTTATCGTAGCATTAGCAATCAGCACTGTTCTGCACATTTTGTAACTGACGACCGTATTCAGAATGATGATTTAGAGAAAAAGGGTGCCAAAAGTTTAAAAGAAAACCAGTTTATAGGAGAAGAATCTCATCAAGAACTGGAACAAGAATCTTTCGTATCCAATAAGGATTTAAAACGAGTTGACAATAGTAGTAATAGAATCCAAATATTAGAAAACAGACTAGTAACTTTTGAAGAACTACTTTTGATGCAAGTTAAAGCTGGAGTTAATGTAAAAGGTAAACGACAAAAAATAGCTGCAGGAGCCGAAGTTATAACACATAATGACGTTGTTAAGCGTAAAATGGAAGAAAAAATTAAAAATATAAAAAAAGAACCACAGACAGAGAAAAATACGACTATGAAAAAAAAACAACCAAAGACTAACAACCTAAACAAAAAAAAACAAAAGAAAACACAAAGAAAAGCACCATCCAACAAAACGACACCTGACATTACGAGTGACGATGATTCAGATGTGACAACTAAGCGAGATAGTTCATTTTATGGTCCATCTACTTCAACAGGAAAGACGGGTATAACAAGAAATAGGAAACGAAACCGATTGCCATCAATTGACTCCATAACTAGTATATCTGATATAATGAGTCTATATAGCGATACGAACATCAGCGATAGATCACTGTTCGACTATGACTTCGATAATGAAGTCAGTTGTTTTGCAGACAATTATATAGTGAATCAAGAAAATCTTAGTGACAATGACATCTTACAGATTAACGTAACAGGTAAACAACAAACAATAGCTCTAGAAAGAATAAAAAAAGAACCGAAAGCAAAGAAAAATACGACCATGAGCAAAAATCAACCACAGAAGACTAACCTAAGCAAGAAAGGAAAAAATAAAATACAAAGAAAAACAACTTCCAACGAATCGACACCTGACGTAACGAGTGACGACGATTTTACCAAAACGTTAAGTGATCCTGAAAACGACAAAGAAAATTCTGTTCCTGCATATCATGCAGATATGACATCAAACGGAGATACTTCATTTTCTGGCCCAACTACTTCAACAGGAAAGTCATTGAAAAGAAATGCTAAACGAAACCGCTTGCCATCAACTGACTCCATTATCCCATCTGATAAAATTAATATATTTAGCGTTGTGCATCAAGAAAATACTAGCAACAATGACAACTTACAGCATAACGGAACAGGTGAACGACAAACAATACCTCCAGAAAGAATAAAAAAAGAACTGCAAGGAAAGAAAAATACGACCATGAGCAAAAACCAACCAGGGAAAATTAACCCAAACAAGAAAAAAATAAAAAAAACACAAAGAAAAACATCTTCCAACGATACAACACCTGACGGTGAATTTGCTACCACGTTAAGTGATCCTGAAAATGACAAAGAATATTCCGTTCCTGCATCTCATGCAGATACAACATCAAAAGGATTTACTTCATTTTCTGGTCCAACTACTTCAACAGGAAACTCATTGAAAAGAAACCGCCTGCCATCATCCGACTCCATAACTATTGTTTCTGATAAAATTAATAATCCTAGTGACAATGACATTTTACAGCAAACTTACAGTATCAATGATTCCGTGCTTGTGAGATACCGTATGAGACAAAAGTGGAACTATTACATTGGATTTATCGAGAAAATCAAAGTAGTGGATGACGAAACATACTATTCCATAGATTTCTTAAAAACTGTTAAGAAACCACAACTAGTTTTTAGTATGACAAAGAGAAAAGATCGTGATGATGTACCCACAGTGTCGATAGTTAAAAAAATTGAAATAGAGACTGTGAATGCAAAACAATATTACTTATGTAATATTGAAGATAAGGTATATTTTTAA
- Protein Sequence
- MVSNYKRKTNKGSYSKQKLQEAAEAVRNGHLSGYKAAQIYNIPRMTIMDHVKNRRFKSNSLGRSTALTLEVETKLASLLHLMEKYGFGLTKKEVLEMVGQYVNRNLISTPFKNGAPGQAWFTAFKKRHHFSVKKPQAVEYARKKAVDPFIVYPYFELLNNTLKELNLLNQPAAIWNLDETSFSNDPKKSKIVGMKGHAATRVISSPGRENTTVLLGASALGQKTPPLIIFKGKNVWDEWTSPYAYPGTSYAATKKGWMETDVFEMYFKKVFLPAVGDQRPILLIYDGHATHVGLNIIEEARKADITILKLPPHTSHILQPLDVAVMKSFEDRWDPMLVKWQRSNIGVKLPKKEFARLIGVVWAQIDSQVLRNGFRKAGIYPFNSEEIKESLFDSLQLRRWKELKVLKSQERHEYDHNNQERLVCYNDESLYVATTYEPQSLLSLALNCTIQVIGINSYRSISNQHCSAHFVTDDRIQNDDLEKKGAKSLKENQFIGEESHQELEQESFVSNKDLKRVDNSSNRIQILENRLVTFEELLLMQVKAGVNVKGKRQKIAAGAEVITHNDVVKRKMEEKIKNIKKEPQTEKNTTMKKKQPKTNNLNKKKQKKTQRKAPSNKTTPDITSDDDSDVTTKRDSSFYGPSTSTGKTGITRNRKRNRLPSIDSITSISDIMSLYSDTNISDRSLFDYDFDNEVSCFADNYIVNQENLSDNDILQINVTGKQQTIALERIKKEPKAKKNTTMSKNQPQKTNLSKKGKNKIQRKTTSNESTPDVTSDDDFTKTLSDPENDKENSVPAYHADMTSNGDTSFSGPTTSTGKSLKRNAKRNRLPSTDSIIPSDKINIFSVVHQENTSNNDNLQHNGTGERQTIPPERIKKELQGKKNTTMSKNQPGKINPNKKKIKKTQRKTSSNDTTPDGEFATTLSDPENDKEYSVPASHADTTSKGFTSFSGPTTSTGNSLKRNRLPSSDSITIVSDKINNPSDNDILQQTYSINDSVLVRYRMRQKWNYYIGFIEKIKVVDDETYYSIDFLKTVKKPQLVFSMTKRKDRDDVPTVSIVKKIEIETVNAKQYYLCNIEDKVYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036561;
- 90% Identity
- iTF_00036561;
- 80% Identity
- -