Alit024983.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- clz9
- Assembly
- GCA_949152395.1
- Location
- OX424505.1:14354038-14357286[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-11 3.1e-08 34.6 0.1 4 40 18 55 15 59 0.85 2 2 3.6 1.8e+03 0.2 0.0 23 38 988 1004 987 1008 0.81
Sequence Information
- Coding Sequence
- ATGGTAAgcaattacaaaagaaaaacaaacaaaggaTCATATTCGAAACAAAAGTTACAAGAAGCAGCAGAAGCTGTTAGAAATGGCCATCTGAGTGGCTATAAAGCTGCGCAAATTTATAATATTCCTCGCATGACTATTATGGACCATGTGAAAAACAGGAGATTTAAATCCAATTCTCTTGGCAGAAGCACTGCGCTGACTTTGGAAGTCGAAACAAAATTAGCTTCGTTACTACATTTAATGGAAAAATATGGTTTCGGTTTGACCAAAAAAGAGGTCCTAGAAATGGTTGGCCAGTATGTAAACCGTAATCTCATATCGAGGCCTTTCAAAAATGGAGCTCCAGGGCAGGCGTGGTTTACTGCATTCAAAAAACGACATCATTTTTCCGTGAAGAAACCCCAGGCAGTGGAATACGCGCGTAAGAAAGCCGTAGACCCATTTATAGTTTACCCATATTTTGAATTGCTTAATAATACATTGAAAGAATTAAATTTATTGAATCAACCAGCCGCCATTTGGAATTTAGACGAAACTAGTTTTTCGAATGATCCCAAAAAATCAGAAATTGTTGGCATGAAAGGACACGCCGCGACAAGAGTCATTTCATCGCCTGGTAGAGAAAACACTACTGTTTTGCTTGGCGCCAGTGCATTAGGACAAAAAACACCCCCACTAATAATTTTTAAGGGCAAAAACGTTTGGGATGAATGGACATCTCCGTATGCTTATCCCGGCACATCCTACGCTGCTACAAAAAAAGGATGGATGGAGACCGACGTCtttgaaatgtattttaaaaaagtttttttgccaGCTGTTGGAGATCAACGTCCGATTCTTCTTATTTATGATGGACACGCTACTCATGTAGGATTAAATATAATCGAGGAAGCGCGTAAAGCAGATATAACAATACTTAAACTACCTCCGCATACTAGTCACATATTACAACCGCTGGATGTAGCGGTCATGAAATCATTTAAAGATCGGTGGGATCCAATGCTCGTAAAATGGCAGCGTTCAAATATCGGAGTGAAGCTCCCAAAGAAAGAGTTTGCGAGGTTAATTGGAGTGGTTTGGGCTCAAATTGATAGTCAAGTTTTAAGAAATGGCTTCCGCAAGGCTGGAATTTACCCGTTCAATTCTGAAGAAATCAAAGAAAGTCTGTTTGATTCGTTACAGCTAAGACGTTGGAAAGAACTCAAAGTTCTTAAGTCCCAAGAACGACATGAATATGACCACAATCATCAAGAAAGACTCGTTTGTTACAATGACGAATCTTTGTACGTTGCTACAACATACGAGCCACAAAGTTTGCTTTCGTTAGCCTTAAATTGCACCATACAAGTAATTGGCATTAATTCTTATCGTAGCATTAGCAATCAGCACTGTTCTGCACATTTTGTAACTGACGACCGTATTCAGAATGATGATTTAGAGAAAAAGGGTGCCAAAAGTTTAAAAGAAAACCAGTTTATAGGAGAAGAATCTCATCAAGAACTGGAACAAGAATCTTTCGTATCCAATAAGGATTTAAAACGAGTTGACAATAGTAGTAATAGAATCCAAATATTAGAAAACAGACTAGTAACTTTTGAAGAACTACTTTTGATGCAAGTTAAAGCTGGAGTTAATGTAAAAGGTAAACGACAAAAAATAGCTGCAGGAGCCGAAGTTATAACACATAATGACGTTGTTAAGCGTAAAAtggaagaaaaaattaaaaatataaaaaaagaaccacAGACAGAGAAAAATacgactatgaaaaaaaaacaaccaaagaCTAACaacctaaacaaaaaaaaacaaaagaaaacacaaaGAAAAGCACCATCCAACAAAACGACACCTGACATTACGAGTGACGATGATTCAGATGTGACAACTAAGCGAGATAGTTCATTTTATGGTCCATCTACTTCAACAGGAAAGACGGGTATAACAAGAAATAGGAAACGAAACCGATTGCCATCAATTGACTCCATAACTAGTATATCTGATATAATGAGTCTATATAGCGATACGAACATCAGCGATAGATCACTGTTCGACTATGACTTCGATaatgaagtcagttgttttgcAGACAATTATATAGTGAATCAAGAAAATCTTAGTGACAATGACATCTTACAGATTAACGTAACAGGTAAACAACAAACAATAGCTctagaaagaataaaaaaagaaccgaAAGCAAAGAAAAATACGACCATGAGCAAAAATCAACCACAGAAGACTAACCTAAGcaagaaaggaaaaaataaaatacaaagaaaaacaaCTTCCAACGAATCGACACCTGACGTAACGAGTGACGACGATTTTACCAAAACGTTAAGTGATCCTGAAAACGACAAAGAAAATTCTGTTCCTGCATATCATGCAGATATGACATCAAACGGAGATACTTCATTTTCTGGCCCAACTACTTCAACAGGAAAGTCATTGAAAAGAAATGCTAAACGAAACCGCTTGCCATCAACTGACTCCATTATCCCAtctgataaaattaatatatttagcGTTGTGCATCAAGAAAATACTAGCAACAATGACAACTTACAGCATAACGGAACAGGTGAACGACAAACAATACCTccagaaagaataaaaaaagaactgcAAGGAAAGAAAAATACGACCATGAGCAAAAACCAACCAGGGAAAATTAACCCaagcaagaaaaaaataaaaaaaacacaaagaaaaACATCTTCCAACGATACAACACCTGACGGTGAATTTGCTACCACGTTAAGTGATCCTGAAAATGACAAAGAATATTCCGTTCCTGCATCTCATGCAGATACAACATCAAAAGGATTTACTTCATTTTCTGGTCCAACTACTTCAACAGGAAAGTCATTGAAAAGAAACCGCCTGCCATCATCCGACTCCATAACTATTGTTtctgataaaattaataatcctAGTGACAATGACATTTTACAGCAAACTTACAGTATCAATGATTCCGTGCTTGTGAGATACCGTATGAGACAAAAGTGGAACTATTACATTGGATTTATCGAGAAAATCAAAGTAGTGGATGACGAAACATACTATTCCATAGATTTCTTAAAAACTGTTAAGAAACCACAACTAGTTTTTAGTATGACAAAGAGAAAAGATCGTGATGATGTACCCACAGTGTCGatagttaaaaaaattgaaatagagactgtgaatgcaaaacaatattacttatgtaatattgaagataaggtatatttttaa
- Protein Sequence
- MVSNYKRKTNKGSYSKQKLQEAAEAVRNGHLSGYKAAQIYNIPRMTIMDHVKNRRFKSNSLGRSTALTLEVETKLASLLHLMEKYGFGLTKKEVLEMVGQYVNRNLISRPFKNGAPGQAWFTAFKKRHHFSVKKPQAVEYARKKAVDPFIVYPYFELLNNTLKELNLLNQPAAIWNLDETSFSNDPKKSEIVGMKGHAATRVISSPGRENTTVLLGASALGQKTPPLIIFKGKNVWDEWTSPYAYPGTSYAATKKGWMETDVFEMYFKKVFLPAVGDQRPILLIYDGHATHVGLNIIEEARKADITILKLPPHTSHILQPLDVAVMKSFKDRWDPMLVKWQRSNIGVKLPKKEFARLIGVVWAQIDSQVLRNGFRKAGIYPFNSEEIKESLFDSLQLRRWKELKVLKSQERHEYDHNHQERLVCYNDESLYVATTYEPQSLLSLALNCTIQVIGINSYRSISNQHCSAHFVTDDRIQNDDLEKKGAKSLKENQFIGEESHQELEQESFVSNKDLKRVDNSSNRIQILENRLVTFEELLLMQVKAGVNVKGKRQKIAAGAEVITHNDVVKRKMEEKIKNIKKEPQTEKNTTMKKKQPKTNNLNKKKQKKTQRKAPSNKTTPDITSDDDSDVTTKRDSSFYGPSTSTGKTGITRNRKRNRLPSIDSITSISDIMSLYSDTNISDRSLFDYDFDNEVSCFADNYIVNQENLSDNDILQINVTGKQQTIALERIKKEPKAKKNTTMSKNQPQKTNLSKKGKNKIQRKTTSNESTPDVTSDDDFTKTLSDPENDKENSVPAYHADMTSNGDTSFSGPTTSTGKSLKRNAKRNRLPSTDSIIPSDKINIFSVVHQENTSNNDNLQHNGTGERQTIPPERIKKELQGKKNTTMSKNQPGKINPSKKKIKKTQRKTSSNDTTPDGEFATTLSDPENDKEYSVPASHADTTSKGFTSFSGPTTSTGKSLKRNRLPSSDSITIVSDKINNPSDNDILQQTYSINDSVLVRYRMRQKWNYYIGFIEKIKVVDDETYYSIDFLKTVKKPQLVFSMTKRKDRDDVPTVSIVKKIEIETVNAKQYYLCNIEDKVYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037714; iTF_00147250; iTF_00147251; iTF_00147252; iTF_00037715; iTF_01192572;
- 90% Identity
- iTF_00037714; iTF_00147250; iTF_00147251; iTF_00147252; iTF_00037715;
- 80% Identity
- -