Alot003479.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376227.1:21848977-21851325[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-16 2.7e-13 49.8 0.2 1 37 13 49 13 56 0.93
Sequence Information
- Coding Sequence
- ATGGAGCCACCAAATAAAAACCCGCGTGGAGAGTGGACAGAAACTCAGCTAAAGGAAGCCCTTCGAGCAGTAAGTAGCAAACAGATGTCTCAACGAAAAGCAGCTGCAAAATATGGCATACCAAGGCGTACATTAAGAAATCATATAGCATCTAAATCTACAGAAAAGATAACTGGTCGTGTCCCGATTcttaataaaatacaagagaagaatttatgtaaaagggtgattagacttgctcaaataggtttgccattgacccccaaaattgttcgtaagcaagcttatgaattctgtaaagcaaatagtataccgaattgttttaatgaaaaaaaaaatattgctggaaaaaaatggctgaaaaattttgtaaaccgcaatccagaaatatctcttcgtagagctcaattaatgaatccggcaagagcacagaaattaaacaagcccatcgtgctgaaacattttgaagccgtcaaaaaaatatatgatgaaattaatatctgtagtcacccggagcgtttatataatatggatgaaaagggatgtagacttacactgcaccatcaacagaaagtctttgctgcaaaagggactaaaagagtgcaccttgtcgctcaagaacacgcagaaaatgttactatagcaatgtgtgtaaatgcaactggaaatagtgtacctccaatgatcatatttaagggcaaaaggttgagacctgaattttgtgaaaatttgccacctggcagcttagtaaagatggccccgaaaggaagtatgacaaccgatctttttgtggactttatacatcatctgggacggtataaatcaccagaaaaatgtttactcattttcgatggggcttcttctcatttagacgccagaattgttgatgctgcagacgctcatgatattgtgctgtattgcttaccatccaataccacacatgaactgcaaccgcttgacaagtctgtaaatagatcttacgagcagttttgggacgaagaagtcttactgtatgcttatcaaaatccagatcgtaagattacaaaatcgcgttttaacaaaatctttacgaaggtttggtccaagtgtatgaccacaggaaatatcatcagtgggtttagagcaaccggtctctttccgtatgatccTAATGCGATTCCTGTAGAAGCGTACGCGCCTTCAATACTTACACAACTGCCCAATCCACATGATTCACTTCAAAATGTTTCCAGAACGCATGACTCAATTTGCGATATGGCAGCTCCACAAGCTTCTAACTTAAGAAGTTCTGTTATATCCCCAAGACGTGACAACTGCTCTGATTCAGATATCACAGATTGCGAAGAAAATCTTGGAAATGTTTCTCCATCTATTCTCACCCAGAATGAATTTAGCGAATTGAGGGAATATGAAGTCGTTGAACAAAGAAATGTACCAAAAAATCCACAATATCCAACTGGTATTGGAAAGTTAGTCAATTATAGTTCCTCTTCCGAATTTTCTGATTTTAATGACTTGGAAATCCAAAAACAGGTTCAGGGGCAACCTTTTCTGGACAATAATTACAGAAACACTGAATTTTGTTCACCTGTTCCTACGACTTCTGGGATCAACATGCAGCCTCGCCCGCCGTTAAATTCTTTTACTTCAGATAGCTCCAGTGTAGAAGACTTGAACACTTGCTTAAAATATTTCCAATATCCTCAAAAACCTTCAAAACTTACTGATATTTATAGTTCATCTTCAGAGTCAGATGAAGAAAATTTAAACCCGAACTGCAGAAAATTTATACAACTCTCTGAGCAAAACCAGGTGCAGTTCGAGGAATCTGAAGATGATTTACCATTAGCAAAATATAAAGAAGATGCTGGTACTTCAGCCTCTAAGTCACCGTTCCACAAACAAATTCCAACACCAAATTTTGCAACGATTAAAAATAAACCGCGACGGAAAGCGTTAAATTACATAGGCCAGAAAATTACCAAAGATTTGTTTGATGTTGTTAAAGATAAAACCAAGAAAAACACAAAAAAAGAACTTATTAATAAACCAACCAGAGGTGAAAGACAGCTAAGTGTCACAAATAAAAGTAAAAGATCTGGACAAAATAAAGAAAAAGTTAAAAGAACGAAGAAAAGCCAACACACAGAGAGTAACAAACTTAAAAAAATAAGTAAGAAGGGCTCTAAAACACCTAAAAAAGCCGAAGATTGGTATTGTCACGGATGTGAGATGAATAGAATTGCTGACATGCGTCAATGTATCAACTGCCAGAATTGGTATCACGAAGAATGTGTTGGCTTAACTACGGAGGACGAGGAACAATTTGTGTGTCCCGATTGTAACTAA
- Protein Sequence
- MEPPNKNPRGEWTETQLKEALRAVSSKQMSQRKAAAKYGIPRRTLRNHIASKSTEKITGRVPILNKIQEKNLCKRVIRLAQIGLPLTPKIVRKQAYEFCKANSIPNCFNEKKNIAGKKWLKNFVNRNPEISLRRAQLMNPARAQKLNKPIVLKHFEAVKKIYDEINICSHPERLYNMDEKGCRLTLHHQQKVFAAKGTKRVHLVAQEHAENVTIAMCVNATGNSVPPMIIFKGKRLRPEFCENLPPGSLVKMAPKGSMTTDLFVDFIHHLGRYKSPEKCLLIFDGASSHLDARIVDAADAHDIVLYCLPSNTTHELQPLDKSVNRSYEQFWDEEVLLYAYQNPDRKITKSRFNKIFTKVWSKCMTTGNIISGFRATGLFPYDPNAIPVEAYAPSILTQLPNPHDSLQNVSRTHDSICDMAAPQASNLRSSVISPRRDNCSDSDITDCEENLGNVSPSILTQNEFSELREYEVVEQRNVPKNPQYPTGIGKLVNYSSSSEFSDFNDLEIQKQVQGQPFLDNNYRNTEFCSPVPTTSGINMQPRPPLNSFTSDSSSVEDLNTCLKYFQYPQKPSKLTDIYSSSSESDEENLNPNCRKFIQLSEQNQVQFEESEDDLPLAKYKEDAGTSASKSPFHKQIPTPNFATIKNKPRRKALNYIGQKITKDLFDVVKDKTKKNTKKELINKPTRGERQLSVTNKSKRSGQNKEKVKRTKKSQHTESNKLKKISKKGSKTPKKAEDWYCHGCEMNRIADMRQCINCQNWYHEECVGLTTEDEEQFVCPDCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00622728; iTF_00622730; iTF_00622731; iTF_00622732; iTF_00622733; iTF_00622734; iTF_00954339; iTF_01208040; iTF_01208039; iTF_00072107;
- 90% Identity
- iTF_00622728;
- 80% Identity
- -