Alot000436.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- TFDP1
- Assembly
- GCA_947364205.1
- Location
- OX376225.1:11343443-11362250[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3 7.9e+03 -2.9 0.0 19 38 124 147 110 164 0.55 2 3 2.9e-23 1.8e-19 69.7 0.1 2 65 171 250 170 250 0.97 3 3 2.5 1.6e+04 -3.8 0.0 49 59 409 419 409 421 0.76
Sequence Information
- Coding Sequence
- ATGTCTCAGACGAATAGTACTGTAAATTTTCTTATACATGACGCTAATGGGCATCCACAAATGGTAAAGGTCGTCCAAAATAATACAAACAATCAGACACTTGGTCAGATCAAAATTAAACCTAATCCTGTGAAAATTATAAAACTTCCTACCGCAGTAGAAGGAAATATTAAGACATCATTATACCGAGCAGTGAAGTTGACTGGACTCAAATGTGCATCAAAGTTCGTGCATATTGATAATTTAGCAAGTTTGCAAAAAATTAAAGTTGAGCCAAAAGAAGTTGAAGAACTTGAGGTAAAACAAGAGCCATTGACTGAACTGAAATTTGCACAAACTGTACCACATCTAATTTCATTACCGTCAAAGTCCGAAAACCAAGTAACAAGCGCTAGCACTGCAAATAGCTTATCTCCAACTATGTCGCATGCGTCTAGAAGGAGACATGATTCGGACAATGATCCCCCGGCAGAATATACCACTAAGAGACGCAAACATGCGGACAAAGTTGGCAAAGGCTTGAGGCATTTTTCAATGAAAGTATGTGAAAAGGTCAGAAATAAAGGCTTCACTTCTTATAACGAAGTAGCAGATGAATTAGTGCTAGAATTTGCTGCAGGAATGCATGGTTCAGCAGATAGCCAACAATATGACCAAAAGAATATCCGCAGAAGAGTATATGATGCCTTAAATGTATTAATGGCAATGAATATAATATCTAAAGAAAAGAAAGAAATAAGATGGCTTGGACTACCCACAAATAGTGTGCAAGAATGTACTGCATTAGAAAAAGAAAAACAGTCAAAGCTGGAGCAGATTCAAAAGAAGACACAACAATTACAAGAACTGATATTACAGCATATTTCATTTAAAAGTTTGATAGAAAGAAACAAAGAAGCCGAGAGCAAAGGAGTTAAGCCATCTCCATCATCAGCAATCCATTTGCCATTCATTGTTGTGAATACTAGTGATAAAGCTTTAATTGACTGCAGTATTTCTAATGATAAGACAGAATATATGTTCAATTTCAACAAAAAGTTCCAAATACACGATGACATCGACATTTTGAAAAGAATGGGTCTCTTATTTGAAGAATATCGTGAGACTGAAACAAACCTGTATGAACGCACGTCTAGACTGTTTTACGAAATTATGGGTATAGATATAGATCCTTATATAGAAGACATTAAACGTATAGGGAAAAGAGGAAATAGAAGGCCTCTCGCTATTGAATTGATAAGCAAGAGAATGACCAACTGCATACTGGAAAATGCAAGTATCTTTAAGAATACTGGAATAACTATCGAAAAATGTATGGAGAGGAAAACACTTGAGGAAAAGAATGAACTAAGACAAAACCTAACAAAGGCACGAAAAAATGGAGATTATGCTATTATTAGAAACAACAAATTATTCATAAATGGAAAAGAATTTATTAGTCCCAATAAACCTAAAACAGAAATGCTGCAAAACAAAAACCAAATGGAAAATAAAATCATAGAAGATATACCACCCGTCATAGAGAGAGAAAATACACCCGACTCCATATTCGTACACCCAACAAAACCCCAGCAGCTCAACGCATGA
- Protein Sequence
- MSQTNSTVNFLIHDANGHPQMVKVVQNNTNNQTLGQIKIKPNPVKIIKLPTAVEGNIKTSLYRAVKLTGLKCASKFVHIDNLASLQKIKVEPKEVEELEVKQEPLTELKFAQTVPHLISLPSKSENQVTSASTANSLSPTMSHASRRRHDSDNDPPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFAAGMHGSADSQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSVQECTALEKEKQSKLEQIQKKTQQLQELILQHISFKSLIERNKEAESKGVKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKKFQIHDDIDILKRMGLLFEEYRETETNLYERTSRLFYEIMGIDIDPYIEDIKRIGKRGNRRPLAIELISKRMTNCILENASIFKNTGITIEKCMERKTLEEKNELRQNLTKARKNGDYAIIRNNKLFINGKEFISPNKPKTEMLQNKNQMENKIIEDIPPVIERENTPDSIFVHPTKPQQLNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -