Alit040439.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424519.1:7459843-7463059[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.1 1.1e+03 1.8 0.8 1 23 97 120 97 120 0.88 2 18 0.0021 0.26 13.2 3.2 2 23 147 168 146 168 0.97 3 18 0.0082 1 11.4 0.7 2 23 191 212 190 212 0.96 4 18 0.001 0.13 14.2 0.2 1 23 216 238 216 238 0.98 5 18 0.37 46 6.2 2.2 1 23 243 266 243 266 0.97 6 18 0.25 31 6.7 2.6 1 23 272 295 272 295 0.95 7 18 0.0064 0.8 11.7 5.9 2 23 303 324 302 325 0.95 8 18 0.74 92 5.2 0.3 1 15 331 345 331 347 0.88 9 18 0.66 82 5.4 0.3 3 23 414 435 412 435 0.90 10 18 0.017 2.2 10.3 0.2 2 23 461 483 460 483 0.93 11 18 0.0014 0.17 13.8 0.6 2 23 506 527 505 527 0.97 12 18 0.0013 0.17 13.8 0.0 1 23 531 553 531 553 0.98 13 18 1.9e-05 0.0024 19.7 1.9 1 23 558 581 558 581 0.98 14 18 0.25 31 6.7 0.4 2 23 589 611 588 611 0.94 15 18 0.00019 0.024 16.5 2.2 2 23 619 641 618 641 0.96 16 18 1.5e-05 0.0019 20.0 2.4 1 23 647 669 647 669 0.98 17 18 1.7e-05 0.0021 19.8 1.0 1 23 675 697 675 697 0.99 18 18 9.9e-05 0.012 17.4 4.4 1 23 703 726 703 726 0.97
Sequence Information
- Coding Sequence
- ATGATTAATGCATCAAATAAAGTCGTACTTTTCTTTATAGGTATACCTCAAGCAGATACAGTCGAAATTAAAATAGAAGTCGAACCAGATGAAGTTAAGAAAGAAGAAATTACTCAACCGGAAATTGCTGGTATGAGTGTGGCAAACACTAAAGCAGCAAAATCTTCCTGCAAACCTCCTGTAGTGTCTAAAGGGTACAGTGCTGAAATTTACAAGCATAAAAAGAATATCACAGAAATAATGCGTTGGTCCAACGCTACACCAATAAAACTTTGGGGAGATATGGGTTACATGTGTTGTTACTGTGAAGACCAATACTTAGACCCGGCGGAACTCAAGACACACACCCTACAAGTCCATGAAGACGTTACTAAAGCCTTCTTCATAAAAAACATGTGCATGTACAATTACATCATCAAATTAGACATCACTGATTTGCAATGCAACATATGtcacaaaagtatcgatacttgtGAAGAATTAATGGACCACTTGAAGAAACACAAGAAAATTATACATACTGACATCAAAAATCACATAGTCCCTTTCAAGTTTGGCATGAATCCTCTTGAATGTTTCATTTGCAAGAATGTTTTcaacaaattcaaattattattaatgcaTATGAATATACACTATAGAAACTATGTATGCGATATTTGCGATGCCGGTTACGTAAATTATAATAGCCTTAAGATACATAAAACAACACACCAaactgaaaatttcaactgttcttcttgctctatgaagttCGACACATTGGCTAAAAGAAACCAGCATGTAAAGACTAAGCATTCCAAAATTATTCGTCACAAATGTGGGTACTGTAAGGAAAGGTTCAATGAATATAGGAAGAAGGAAGATCATCTAATAACTGTACATGGACTGCAAAAACAAAAGTCGAAATGCCAAGCGTGTGATAAAGAATTTGAGCACCGGAAACATTTAGCCGTGCACGTTAAAAGACACCATTTGATGGTAAGACCACACGCTTGTGAACTGTGTGAGAAGAAATTTTTCAGTGCAAGTCACGCACGGGGATCTAGAATAATCAAAATAGAAAAACCGTCAAAAGCAACCGTTGAATTGAAGTTCATCTCAAATTTAACAAGAGACTCAAATGCCATCCTAAAAGGCTCAATATCAGAAACTGTGAAGAACAAACTGaatctaaaaaatatattgctCAACTCTAACGCAAACCCAATAAGgtgtaaagatggtcaaggATATGGCTGTTCGTTCTGTCCTAAACAGTTTCTGGAGCCGACTGCTCTCAAGAAGCACTTTCTGGAAGAACATAACAATGACAAACTGATAAAGTACATGACCTCTAAGCTTTTTGATCATGTCATCAAGTTAGATATAACGTATTTGAATTGTGCTCTTTGTGACAAAGACGTCAAACATCTGGACGACCTTGTAGCACATCTGAAGGACGATCATAACAAGTCGATGTATCTAGACGCTAAAAGCCAAATCGTCCCGTTCAGATTCGACTCGCCCGAACTAAAATGTGTCATATGCTCCACAGAATACAGTTCATTCAAACTATTACAAGAACATATGAATTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCAGGTTTTGTGACTGACAGACTCCTTGTAAGCCATGTCAAACGGCATGATAGCGGAGAGTATAAATGTGATCAATGCgataaaacttttacaaaccAGATTAAAATACGCGAGCACATTAAACGAACACATCTAGGTCAGAGCAAAAGAAACAAATGCAATTACTGCGCGGAAAGATTCGTTGATTACTGGAAGAAGATGGATCATATGGTGAAAGAGCACGGAATGCCCCCTGTCGTCCTTAAATGTTCCGCTTGTGAGCGAACTTTTAGTAACCAACGGTCCTTATCACGGCACACGAAGAAAGACCACCTTTTGGAGAGAAGGCACAAATGTAACGAATGTGACATGAGATTCTATGGAAAGAGTGGTTTGCAAAAACACATGGCCAAGCATACGGGGCTGAGGCAGTTCAGGTGTGAAGTTTGCTTTAAGGCCTATGGAAGGAAGAATACGCTAAGAGAGCATATGAGGATCCATGCGAATGATAAGAGATTCGCTTGCACTCACTGTGGCCAAGCGTTCGTTCAAAAGTGTAGCTGGCGGAGTCACATGCGTTCTAAACATGGAGAAGAAGTCTAA
- Protein Sequence
- MINASNKVVLFFIGIPQADTVEIKIEVEPDEVKKEEITQPEIAGMSVANTKAAKSSCKPPVVSKGYSAEIYKHKKNITEIMRWSNATPIKLWGDMGYMCCYCEDQYLDPAELKTHTLQVHEDVTKAFFIKNMCMYNYIIKLDITDLQCNICHKSIDTCEELMDHLKKHKKIIHTDIKNHIVPFKFGMNPLECFICKNVFNKFKLLLMHMNIHYRNYVCDICDAGYVNYNSLKIHKTTHQTENFNCSSCSMKFDTLAKRNQHVKTKHSKIIRHKCGYCKERFNEYRKKEDHLITVHGLQKQKSKCQACDKEFEHRKHLAVHVKRHHLMVRPHACELCEKKFFSASHARGSRIIKIEKPSKATVELKFISNLTRDSNAILKGSISETVKNKLNLKNILLNSNANPIRCKDGQGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMTSKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDDHNKSMYLDAKSQIVPFRFDSPELKCVICSTEYSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDQCDKTFTNQIKIREHIKRTHLGQSKRNKCNYCAERFVDYWKKMDHMVKEHGMPPVVLKCSACERTFSNQRSLSRHTKKDHLLERRHKCNECDMRFYGKSGLQKHMAKHTGLRQFRCEVCFKAYGRKNTLREHMRIHANDKRFACTHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123579;
- 90% Identity
- -
- 80% Identity
- -