Alit008841.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424494.1:15053898-15054623[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-07 0.00026 22.1 0.2 6 40 9 43 7 47 0.90
Sequence Information
- Coding Sequence
- atgagttacgcaattagggtactggtctcagCTGTTCGCGCAGTACAGAGAGGAATTAAAAGTACATATGCGGCTGCAGAAAGATACAAGATTCCAAGAAGAACCCTCAGCAATCATGTCGAGAGTGGTGTTGTAGTGAAAAGCTTGGGTCGTAAGCCCGTATTGAATCCCGAACAGGAAGCTGATCTTGGGAAGAGGATAATCAGATATGCGGAAATAAGTTTACCTGTCACACCAATAATACTGCGTCGGttggtgtacaaatattgcGTGCTTAATAACATAAAGCACAATTTTGATGAGACTGCTAAACGCGCAGGTAAAGACTGGCTTAAGGAGTTTATGAAAAGACATCCCGAATTATCTATACGAAAAGCCCAGTTCATGAACCCTGCTAGAGctcaaaaactaaataaatttactGTAGATGACCACTTTGAAAGACTGAATGAAGTTTATGATAAACTGGAGCTGAAAGATCATCCAGAAAGAATTTATAACATGGATGAGAAGGGATGCCGTCTGACAATCCATCATCAACAAAGTGTTTTGGCCAAAAAAGGAGCAAAAAGGGTTCATTTGCAGTCTTCTGAACATGCAGAAAGTGTGACTATCGCAGGATGTGTGAACGCACTCGGTACTGCTATACCACCAATGGTGATATTCAAGGGACAACGTTTGAAGCCAGAATTGTACGACAATTTGCCACCGGGTTCTTTGGTGTAA
- Protein Sequence
- MSYAIRVLVSAVRAVQRGIKSTYAAAERYKIPRRTLSNHVESGVVVKSLGRKPVLNPEQEADLGKRIIRYAEISLPVTPIILRRLVYKYCVLNNIKHNFDETAKRAGKDWLKEFMKRHPELSIRKAQFMNPARAQKLNKFTVDDHFERLNEVYDKLELKDHPERIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGQRLKPELYDNLPPGSLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157585;
- 90% Identity
- iTF_00697263;
- 80% Identity
- -