Alit008884.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- clz9
- Assembly
- GCA_949152395.1
- Location
- OX424494.1:15247806-15249982[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-08 4e-05 24.6 0.0 3 40 16 54 14 58 0.88
Sequence Information
- Coding Sequence
- ATGGTGcgcaattataaaaaaaatactgattcTAAATACACCTTAGAAACTTTAAAAACAGCTGTATTAGAAGTAAAGAATGGAGACCTTAATTCATATCAAGCATCACGAAAATATGGGATACCGCGTACAACTATAGTAGATCATGTCAAGCAAAGGCGAGGTGTTGTTAAAGACACACGTGGTAGGCCAACAGAAATCGATGCTGAAAATGAAAGAAGACTAGCTGCTGGCCTACACACTATGGAGAAATATGGCTTCGGCCTCTCCTCAAATGAAACATCAATTTTAGTAACCAAAAACATTGAaagtaataaacttaaaacGCAGTTTAAGAATAATACACCAGGATATGATTGGTTTTCTGCGTTTcttaaaagaaacaaattatCCTTAAAAAAGCCGCAAGCTGTAGAAATGTCCAGAAAGGCAGCCTGTGACCCCTTTATTATTGAAGAATATTTTAACACACTCGAAAGTTGCTTGAATGAGCTGGACTTAAAATTTTCCCCTGAGAGAATCTGGAATTTAGACGAATCTAGTTTCAGTAAAGATCCCGAAAAAACTAAAGTTGTAGGTGCAAAAGGTTACGCAAGTACTCGAACCATAGCCTCTGCGGGAAAAGATAACGTAACGGTCTTATTTACTGCTAGCGCCATTGGTGAAAAATTACCTCCACTGATCATATACCGGGGCAAAAACGTATGGGACCAATGGATGTCTAGAAATGCGTTTGAAGGTACCACATACGCGGCAACTAAAAATAGTTGGATAGAATCCAAAGTATTTGAGAAGTATATGCTTGGTACCGTCTTGCCTCACATGACAAAAGAAAAACCATGTTTGTTGATCTACGACGGTCACTCAACTCACATCCAGTTAAAAATATTAGAGAAAGCCGCAGAAATGGGTGTAACTATTTTAAAATTGCCTCCGCATGCCAGCCACCTTTTACAACCTTTAAATCTAGCTGTCTTCAAATCCATGAAAGACAAATGGGACGCAAAAATATTGGCATGGCAGCGTTTGAACGTGGGAGCCAAATTACAAAAGGATCAATTCAGCGAGATCTTAGGAGAAGTCTGGAAGGAATTAGATCCTAAGATAATTAGAAATGGCTTTAAAAAAGGGGATGAAAGtattgatgatgaaataatatttagtgATGCCACAGAATCTGATGATTGGAACGCTTATTGTGAAAACGCTCTTCAAGACGACGAAGAACAGGACTGTATTCTTGACCACTCTAGTGACGATCAAGTAGTCAATGAAAAGATAAACGATTCAAGACAGGCAGTCATGCTGGACGAACCAAAGCGCCCTCAAGTTGACGATTGGTTAGTAGTTAAGTTTGCGACAAAGAAAACTATCAAGCACTTTGTCGGAAACGTAATTTCAATGAATCTCTATTCCGATATAGTGACCCCAAAAGTCAAATTTCTAAGATTCATTAAGAATAGTAAAATTGATTCATTCCATTACCCCGATGTCGAAGATGTTTCAGTACTCAGACATGACGCTGACATTGAAAAGTTTCTTGAAAAACCCCAAATAACCCGAAGGGGTCATGTTATTTTCAAGGAAaatttaaaagcttttaataTCCAATAG
- Protein Sequence
- MVRNYKKNTDSKYTLETLKTAVLEVKNGDLNSYQASRKYGIPRTTIVDHVKQRRGVVKDTRGRPTEIDAENERRLAAGLHTMEKYGFGLSSNETSILVTKNIESNKLKTQFKNNTPGYDWFSAFLKRNKLSLKKPQAVEMSRKAACDPFIIEEYFNTLESCLNELDLKFSPERIWNLDESSFSKDPEKTKVVGAKGYASTRTIASAGKDNVTVLFTASAIGEKLPPLIIYRGKNVWDQWMSRNAFEGTTYAATKNSWIESKVFEKYMLGTVLPHMTKEKPCLLIYDGHSTHIQLKILEKAAEMGVTILKLPPHASHLLQPLNLAVFKSMKDKWDAKILAWQRLNVGAKLQKDQFSEILGEVWKELDPKIIRNGFKKGDESIDDEIIFSDATESDDWNAYCENALQDDEEQDCILDHSSDDQVVNEKINDSRQAVMLDEPKRPQVDDWLVVKFATKKTIKHFVGNVISMNLYSDIVTPKVKFLRFIKNSKIDSFHYPDVEDVSVLRHDADIEKFLEKPQITRRGHVIFKENLKAFNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147348;
- 90% Identity
- iTF_01440968;
- 80% Identity
- -