Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467308.1:6451970-6464118[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.9 3.6e+02 2.9 0.9 1 23 53 76 53 76 0.94

2 20 0.0027 0.25 12.8 2.9 1 23 83 106 83 106 0.97

3 20 5.7 5.2e+02 2.4 4.6 1 23 192 214 192 214 0.97

4 20 0.0015 0.14 13.6 0.7 2 23 220 241 219 241 0.97

5 20 8 7.3e+02 1.9 2.3 1 23 247 269 247 270 0.93

6 20 0.21 19 6.9 3.4 2 22 509 529 508 529 0.95

7 20 4.1 3.8e+02 2.8 1.0 1 23 628 650 628 650 0.82

8 20 0.63 58 5.4 0.3 2 23 782 803 781 803 0.96

9 20 0.15 14 7.3 0.8 3 23 881 901 880 901 0.97

10 20 0.038 3.5 9.2 0.5 1 23 909 931 909 931 0.97

11 20 0.15 13 7.4 3.4 1 23 965 987 965 987 0.95

12 20 0.00029 0.026 15.9 4.0 1 23 995 1017 995 1017 0.99

13 20 1.1 1e+02 4.6 1.9 1 23 1096 1118 1096 1118 0.97

14 20 1.3 1.2e+02 4.4 0.5 1 19 1176 1194 1176 1198 0.92

15 20 0.011 1 10.9 0.7 1 23 1294 1316 1294 1316 0.94

16 20 0.0047 0.43 12.1 0.4 1 23 1322 1344 1322 1344 0.96

17 20 0.008 0.74 11.4 2.6 1 23 1434 1456 1434 1456 0.97

18 20 0.0002 0.018 16.4 1.4 1 23 1462 1484 1462 1484 0.99

19 20 4 3.7e+02 2.9 1.7 5 23 1578 1596 1574 1596 0.84

20 20 0.001 0.094 14.2 3.9 1 23 1607 1629 1607 1629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.9	3.6e+02	2.9	0.9	1	23	53	76	53	76	0.94
2	20	0.0027	0.25	12.8	2.9	1	23	83	106	83	106	0.97
3	20	5.7	5.2e+02	2.4	4.6	1	23	192	214	192	214	0.97
4	20	0.0015	0.14	13.6	0.7	2	23	220	241	219	241	0.97
5	20	8	7.3e+02	1.9	2.3	1	23	247	269	247	270	0.93
6	20	0.21	19	6.9	3.4	2	22	509	529	508	529	0.95
7	20	4.1	3.8e+02	2.8	1.0	1	23	628	650	628	650	0.82
8	20	0.63	58	5.4	0.3	2	23	782	803	781	803	0.96
9	20	0.15	14	7.3	0.8	3	23	881	901	880	901	0.97
10	20	0.038	3.5	9.2	0.5	1	23	909	931	909	931	0.97
11	20	0.15	13	7.4	3.4	1	23	965	987	965	987	0.95
12	20	0.00029	0.026	15.9	4.0	1	23	995	1017	995	1017	0.99
13	20	1.1	1e+02	4.6	1.9	1	23	1096	1118	1096	1118	0.97
14	20	1.3	1.2e+02	4.4	0.5	1	19	1176	1194	1176	1198	0.92
15	20	0.011	1	10.9	0.7	1	23	1294	1316	1294	1316	0.94
16	20	0.0047	0.43	12.1	0.4	1	23	1322	1344	1322	1344	0.96
17	20	0.008	0.74	11.4	2.6	1	23	1434	1456	1434	1456	0.97
18	20	0.0002	0.018	16.4	1.4	1	23	1462	1484	1462	1484	0.99
19	20	4	3.7e+02	2.9	1.7	5	23	1578	1596	1574	1596	0.84
20	20	0.001	0.094	14.2	3.9	1	23	1607	1629	1607	1629	0.98

Sequence Information

Coding Sequence: ATGCTTCAGCAGATGTTCTCGCCGAACTACAGCGTCGGTGAGGTCGTGTCTCTCGAACGCCCCTTCGAAGGACGATTGTGCGGTGACTCCTCGTCCGAGGCATCTTCGGACGCCGCCGAGGAGGTCGACTTACCGCAGTGCAAGATAAGGCGGAATTACAGCTGCACCAAGTGCAAGTTTTACACACAAAACCCGCGTGTTTATTTAGTGCATATACGCGACGTGCATTTtgaaaagattaaaatatatgACTGTCCACACTGTGTTTATGCCTCGAGGCATCAACAAAAACTTACTAGAcatataaaaatggttcacgGGACATCGACTCCCGCGACTACCGTCAAAATGGAAACGGAACTACCCGCAACGGTTACGAACATTGCGGACCCGATGGAACGCATTGAGGATATGCTCGAAGAAGTAGAGGAATGTGATGACATTGAGATAGACGTAGACGACTGCAACGAGGAGTTGTACGAGCGCTCCGCTGAAGCGAGCATGGAATGTGACAAAGCAGCGATGAACGATGACGCCGCATTACTGGCGGCCATGAAGAATAAAGGAAAATACTTTTCTTGTAGCAAATGCAACTACGTAACTCACATAAAGGCGAGATTCACGAAACACGTAAAATATCACTCGATGCCGATGATCAAGTGCACAATATGTGATTTCCGTTCGCCTTATAAATGGAATCTCGACCGTCACATGAAGAACCACGGTGGCAGCGGAAACTTCAAGTGCTTCATGTGCAACTTCACCGCGGATATCAAGCAGAGTCTGACGTTGCACGAGCTGAATCATCACACGCCGCCCGTGGGCCAATCGGTGACGAGTCGCCGCCGCAATCGGGTGGGCGCCAGCGACATGGCGGACGCTCTCATCCTGAAGGAGGAAGGGAGCGGCGACTCGCGGTCCTCGTTCTCGGCCTCGGACATGCTGAATGCAGAAAAAGACATTGTCAGCTGCCACAGCGACTCAAATGACGCCACATCAGACTCCGGCCTTAAGAAGGACACTGTGCAGTTCGTTCAAGATGGGCAAACTCAACTGTCTCCCAGCGCTTCACCAGATGACGCCAAATCTCAGAAGCAAAATAGGAAAACTCCCAGACCGTTACCACCGCTCATACCATTGCATGCGTCAACACCTAATCAAAGTAAAACGCCATGCGGAGAACCACCGGcgaaaaaattcaaagaaacTCCCAGTACACAGACCGCAGAGTCgaacaaaagtaaaaaattcgAAAACTTGCCGATTGAAATTAGTGTTATACCTGTAAACAACACTCCTACAAGCAGCAAAGAGACCGCTATTAGTCGTAAGAAAAACAACTCATTTTTTGATAAACTCAAAGAAAGACTATTGACTGAAACTGGAGAAGAGGGATCTCTCATTTGTAAAAATTGCGGTTTCGAGAGTAAATGTCTATCAGAACATTCTGTTCACGAGAAAAACTGCACTGCTCAACTGAACCGTACATCAACAAACACGTTACTCCCGAGTTTGAGTTCAACCCGCTGCCAGAATTGTAGACATAGATGCAAATCTAGTGCCGATTTATACGTTCACATGCAAACATGCAGAAAAAGTGAAAAACTTGGAGATGATCCCGCAATGGAAGTAAAAAGTCAGGACAGTAACGAAGGCGAGGCTTCAACGCAGGAGAAAGAAATCGAACCACACCCTATGGAGAATGTTGTATTTGTTTGGAACAATATTGGTCATAGCTCAAATAACTATGACACTCCGCTTGATATCAATATCAACGATGACTCTACTCTTCCAGACATGAACAGAACGTACGATCCAGAAACTGCAGATGACAACGAAAGCATGAATTTATCACCTAGTCAGGCCGTGGGAAAGAAAGTTTTTAAATGTCCGCATTGTCCATTCTGGGCCTCGACTGCCTCAAGATTCCATGTGCATATTGTTGGACATTTGAATAAAAAGCCGTTCGAATGCTCACTCTGCAAGTACAAATCTAACTGGCGCTGGGATATCACTAAACACATCAAACTAAAGTCGGCTAGGGACCCTGAACATAATGAAGCGAAGGTGCTCATGACGGACGAAACTGGTCGTAGAAATTACAGTAAATACAACAAATTCCTAGCAATGTCCGTGTTGAATGATAACGGCGAAACTGTTTTTCACTATATAGATTTAAACGCATCAGCTGACGCATCGATGGAGATGGACGAATCTTATAATGACGTAACAGATGGCATAAACCAGCCGATAGATATGCAACCACTCAATTTACAAATGCATGGCCACGAGCTGATGGATAGGAGGAGTTTAGATTTGAAGAAGCCCAAGAAAACTTTATGGAAGTGCAAGAAATGCAATTACAGAGATCCATCCAAAGAAGCTTTACTAGAGCACGTGCGTGAACATGCGCGTGCAGAAGGCAACCCGGAGGAAATTAAAGTGGCGAAAAAGCCGGAAAATCTTCCGGATCCAGCTGACTTGGCATATCGCTGTGGTCACTGCAACCAACTGTCCAACTGGAAACATGTAATACAGagACATTGTCGCTTGAAACATGATGGAATAATAAAAGTTATAACTACGGTTAAGCCCAAGCCGGACATGACCATGGCACTGAATGATATTCAAGGTGAAAACTGTAACAAGTGCCCCTTCAAAACACCTGACAAAAAGTTGATGTTCGCGCATATCCAACAACACCAGCCATCGCCACAGTCTATTTTTAAATGCTTCTTCTGCCCTTATTTCGTGAAAGATGAGAATGAATTAATACAACACTTACTTTTGCATGGGGTGTCTGAACCAGAAGAGTACATTGCAAAAGCAATGGGACGTAAATCCCCACCTCCAGAATCAGGACCAAACGGTCCACATACGTCGACAAAACGACATAAATGTACGGAATGTCCGTATGAAACTAACAGCAAGTCTCAATATATGTATCATGAACAATTCCATCGGCTACCTGCAGACACTCCCTACAAATGTCCTGAATGTAATTACAGTGTTTCAAAGAGACACCTACTTCATCAACATCTGAGAGTTCACGGAATAATGACAAAGAAGATAGAAACAGAAGCAGAATTAGAAGCAAAGTTAGATACTAGAATTGAATACTCTATTAATCTTGAAGAAATTCCATTTGTCTGGGTTTCAGCTAAAAATGAGTTCCACAAAATGTACAAATGTCGCTATTGTTCTTATGTGAACTCACAGAAATGTAAAATTCCAAACCACGAAAAAATTCACTGCATCGTTTTTGAAAGCAGTGACGTTACGGTCTACAAGTGTTTGGAATGCAAGTTTACATGTGATAGCGCCATAAGGTTAGCCGAGCATTCTAAAAGTCATGGAGAAATATACGGCCGTATTTACTGCCCTGTGGAAGTGGATATCTCAGATGAAGAACAAATCGCTAAATTGCGAAAAgtcattgaaattgaaaaacatAATGTTACAGAAGATGCACCTAAAGAGGAAAAATATTCTATCGTAGGCGAAAACAATGAAACCAAAATACTATTCTTTTGCCAAATGTGTCCAGCTAGATTTTTCGGTGCAGAAGAACTTAAAATTCATGACAAATTCCATGACTTGTCGTTTCCAAATAAATGTAAActttgtgaattttctgtacaGGAGGAAACTGACATAGCTACTCATGTTGTTGTGCATACAGACGAATACCATACCAAAACCAAAATGCTAAAATTCATACATAATTCACATGGTGGGCATAAACAGCCCAACCTAGAACAAATACAATGTGAAAATACTTTAGAAATAACGTGGATGGTTTCATCTCCGGGCAAAAACTATGACATTGAGCCTTCTTTTAATAAGCGACCCCATGACGCAAAACCAACTCCTAAGCAATATTTCTGCAAAGAGTGTCCAGCAAAATTCTTCAAAAATTCTGCGCTAAATTATCATTTGGGATTGCATGGTGGAGAAGGTgaatataaatgtaaaaaatgcaGTTATGCTGTAAAGAACATAGGTAATTTAGCAAAACATGAGTTATTACACGAAAACGAAGGCAAGGCCACAACATGTGATTACGAATCTGGTGAAGatatggattacaaaaatatccCACTCTCGGGTACTGATCTATTTCAAAGAAAGACTGAAGCTCAAAAGCGTGTACTTAACGATAAAGATAAGTTAGTCAAACCAAATGATCATTTTCCGCCAGTTTTGCAAGCTGATCCTCAATTTGGGTATTTAATGCATGGAAATCCTgaatttatttatccaacttACTTGAAAAACGGACGTCAAAAAGAAAAACGATACAAATGCCACAAATGTCCATCTGCTTTTGAAAAAAGGGAACAGTATAAAATACATTTATCATTACATGGCTCTAAGCAACGATACAAATGTGAGCTTTGTGATTACTCTGTTAAGTACTACGCCAATTACGTCCAACATATGAGAAAGCATCAAATGAATGATGAAGCACAAGCAGAAAGGAAGAAGATTAGCAATGGACTCGTAGAGTCCGAACCAGTTGAAGACAAACATGAAGACAGTGATAACATTAAACTTGCAATTAAAACAATGCCTAAGGGCATACCAAAAAGTGATTTCCAACAGTTTTCAATACGCGACCAACAAACGCTTAGACTTCTGCAGCGCAGACGATCAATTAACGGCAATAAAGAGCAGATATCGCCGTCAGACGTATTACCTACAAAAGACAGAAAGTTACACATGTGCATACTATGCCCTTACACGAATCAACGACAAGACGCTTTAAATAATCATTACAGAAGACATGATGAAACTGATGTTCTCAATTCAGGAAGTCACAAATGCTCTTACTGTGACTTGGTTGTTGTGCAATCACATTTCCTTCGGGATCATATGAAAACTCATTTTCACTACCAAAAGAATCTGACTCCTGAATGTTACGTTGCTAACGAGGACGTAGGTTTCACTATAactaaagaagaagaagatggaACGTCGAGAGATCTCAAATTAGATATACAAAACACGAGTCTTATATACAATGATGAAAAGTTATTTGTCAAAATACTAACAGGAGAACTCATAGTtgaataa
Protein Sequence: MLQQMFSPNYSVGEVVSLERPFEGRLCGDSSSEASSDAAEEVDLPQCKIRRNYSCTKCKFYTQNPRVYLVHIRDVHFEKIKIYDCPHCVYASRHQQKLTRHIKMVHGTSTPATTVKMETELPATVTNIADPMERIEDMLEEVEECDDIEIDVDDCNEELYERSAEASMECDKAAMNDDAALLAAMKNKGKYFSCSKCNYVTHIKARFTKHVKYHSMPMIKCTICDFRSPYKWNLDRHMKNHGGSGNFKCFMCNFTADIKQSLTLHELNHHTPPVGQSVTSRRRNRVGASDMADALILKEEGSGDSRSSFSASDMLNAEKDIVSCHSDSNDATSDSGLKKDTVQFVQDGQTQLSPSASPDDAKSQKQNRKTPRPLPPLIPLHASTPNQSKTPCGEPPAKKFKETPSTQTAESNKSKKFENLPIEISVIPVNNTPTSSKETAISRKKNNSFFDKLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTAQLNRTSTNTLLPSLSSTRCQNCRHRCKSSADLYVHMQTCRKSEKLGDDPAMEVKSQDSNEGEASTQEKEIEPHPMENVVFVWNNIGHSSNNYDTPLDININDDSTLPDMNRTYDPETADDNESMNLSPSQAVGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMSVLNDNGETVFHYIDLNASADASMEMDESYNDVTDGINQPIDMQPLNLQMHGHELMDRRSLDLKKPKKTLWKCKKCNYRDPSKEALLEHVREHARAEGNPEEIKVAKKPENLPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPDMTMALNDIQGENCNKCPFKTPDKKLMFAHIQQHQPSPQSIFKCFFCPYFVKDENELIQHLLLHGVSEPEEYIAKAMGRKSPPPESGPNGPHTSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIMTKKIETEAELEAKLDTRIEYSINLEEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFESSDVTVYKCLECKFTCDSAIRLAEHSKSHGEIYGRIYCPVEVDISDEEQIAKLRKVIEIEKHNVTEDAPKEEKYSIVGENNETKILFFCQMCPARFFGAEELKIHDKFHDLSFPNKCKLCEFSVQEETDIATHVVVHTDEYHTKTKMLKFIHNSHGGHKQPNLEQIQCENTLEITWMVSSPGKNYDIEPSFNKRPHDAKPTPKQYFCKECPAKFFKNSALNYHLGLHGGEGEYKCKKCSYAVKNIGNLAKHELLHENEGKATTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKISNGLVESEPVEDKHEDSDNIKLAIKTMPKGIPKSDFQQFSIRDQQTLRLLQRRRSINGNKEQISPSDVLPTKDRKLHMCILCPYTNQRQDALNNHYRRHDETDVLNSGSHKCSYCDLVVVQSHFLRDHMKTHFHYQKNLTPECYVANEDVGFTITKEEEDGTSRDLKLDIQNTSLIYNDEKLFVKILTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00448640;
90% Identity: iTF_00285019;
80% Identity: -