Astr031507.2
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467327.1:7942930-7956471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.88 81 4.9 1.4 1 23 405 427 405 427 0.83 2 10 0.82 75 5.1 0.7 1 21 758 778 758 780 0.87 3 10 0.0068 0.63 11.6 0.1 2 23 785 806 784 806 0.97 4 10 0.96 88 4.8 4.3 3 23 909 929 908 929 0.96 5 10 0.0011 0.1 14.1 2.7 2 23 945 966 944 966 0.96 6 10 1.9e-06 0.00017 22.8 3.2 1 23 972 994 972 994 0.99 7 10 0.0013 0.12 13.8 3.6 1 23 999 1021 999 1021 0.95 8 10 0.00049 0.045 15.2 1.1 2 23 1028 1050 1027 1050 0.96 9 10 2.7 2.5e+02 3.4 0.3 1 19 1056 1074 1056 1075 0.84 10 10 0.00011 0.01 17.2 0.4 3 23 1088 1109 1087 1109 0.96
Sequence Information
- Coding Sequence
- atgcaaGAAGGGCCTGCACCAATAGAATTCAACGTTAAAATTGAAGTAGAAGAATTTTGCGAAGATTTTAATGCTTGTTCAGAGAGCAATTCAATCGTAGACGAAGGCAACACTTGCTCTACAGACTCTTTCACAATCAAAACTGAGGTTACTGACGAATTTGAGGAAATCAAAAACAAAGACGATGATGAACAAGCAGCTGATGAAGGAGAAACTTGTGATGATGACTACAAAAAAGCACAAACATCTAAAAGAAAACCTAAAGACCCTAAGAATATAGGTGCAAAAAAGAAGTctttgctaaaaaaaatttacGACCTCTCACAGTCATCAGCAGTTTcggtaaaacagtgtaagatcaCAGACGAAACAGTTTTCGCGGAACTggaaaaattgatgcaaaaagaTTTGTCTCAAGCTGATAGAATGCTAGTTATTGAAACTAGGAATTCTTGGGGCAGGGTGGCAATGGTGCCGCATACATTTAGTCATATCGACTTACAAATTCAACATGTTCTTAACCAATGGAAAGACTGGTGTATACCCGGTAAACATAAAAGCTCTCCCTTATTGTACATATGTTATATTTGCAGAATCGGTTGGTGGCATTTAAACGATTTAAAAGaacatttgcaaataaatcACGACTCGTCTGAAATTAATTGTTCTATGAAGATAAATTTACAAGAATTCTACTTAACAGTCAATTCGAAAAGTTGCCCTCAGGTTACGACTGATGATATCGCCGTAGTTTCTGATTGTTGGCGGTGTGGAAACGACTTTGATTTTCACATGCCACCAAATAATTGCGACGCCTCTGCCTTTTACAAATGTACGTACTGTAATGTACTTCAGTTTCACAATTGCACGACTTATAATGAGCACCTAAGTTCATGTGTGGAGTACATAAAGTTTCTGAAGACAACAAAGGAAGATGACGATGCGTTAGAGTTTAGTCGTTGTTTCGTTTGCAATATGATTTTGACGACGAAGAAGATAGTGGACGAAcactatgcaaaatttcatttgGTTAGGTCTGACCTGCCGATGATAACAGTGGTGAAAACTTGTAGCATATGCACTATTCAAtacattgaaaaaatatttcacactTGTCCTCGAAGGAATTATAGTATTACATGCATGCATTGCATGCGTAGATTTCCTTCGAGAGTCATGACAGAACTACACAAAAACGCCAACAAGGAAAACTATAGATGCAAAATTTGTAACACAGTACTAAAAAGTCAATGTATGGAGATGGAGCATCTTGTAACTCATAGTGACAATTTCAAAGCTTTATACAAATGTGTCACGTGTgaggagaacatttttttaatggacGAGTTGTCAATGAAACAGCACATTGTGATTTGGCATAAAAAATTCTTCGATAAAAGAAGAAAATTCGTAGAAACGGTTGTGGTGCCTCGGAACTGCGTTGCGACGAGTATGGTCGAACAATTGGATATTGTCTCTTCTCTCAGTGgaaAATTTGAAATAGTAGCAAAACCGAACAGTAATGGTGTTTTAGAAGTATCACAAGTCGAAGAGATAGATTTTAGTAAAAAACAGAAACTGAAAAAAGTTACAACTGATAATACAACACAAAATGATGCTAGTGATAACGAAACTGAGTGTCGAATTATTGAAAATGACAATTTTGTGACGGTTATAGATGATGAGTGTTCTGCTGATGATGAAAATCAAGTGACAGATAAAATTATACATAGAAATATTAAATCGGAAGAATTTAGTGATAAATCGGAAGGTAGTAAAACTACAACGGATTTTATACCAGCAATCAATATTAAAGTGGAAAAGGATGACGAAATACAGGAGTCTGAAGAGGAagtcaaatatatttttgacaAAGTTATTAAGGAAGaatcaaattttaatgttaaatcaACAGATAATGACGATTATGCTAATCTCTTATCGAAAGTATTTGGTGGTTCTCACCATATAACGACAGATGTAGTTAATATCAAACAAGAACCGGAAGAAGAAGAATTCTTCGAGGACGACATTATTAACTTAGTTAGAAACGCTGGAACTGCtgaaagcgaaattaaaattgaacCGGAAGTTAAAACTGAACCAGAAATAAAGCAGGAAGTTGAACAACCTTCAACGTCTAAAGGCAAACGCTATAGAAGAAGGAATAAATGCAGAAAGTGTGATACACAAGGCAATCGTTTTAAGTGCCAAAAACACAGAGCAAAGAAAAATTTTCTACGCCCGTCAACGGTTAATTGTAACGATGCATACAGATGTACTAAATGTAACCAGGATTATGAAACTATAGAAGACTATGCTTATCATTTCGTAGAACATGGTTATGACAGTTCGTGTCCAGCCTGTGGTACGGAGTTAGTGAATAATTCCAACTTTGCTATGCATCTGAAAATGCATGTTCGATATTCTTTTTATAAGAAGCAGTTATTGGAACGGAGTGTTAACGAAGATAATAACCCGGGAAACACTGAAGGCAGTATAGATTTAGTGTATTCTTGCAAAGAATGCAAAGCTAATGTTGATGTGGAATTACTTTTTGAACATTGGGAAGATCATCTCACTTTAGACAAACAAAGCACAAGTAATATGGATTTTAATGAAAAGGACTTGAATACTTCTCTGGATCAGAATTTGctgaaagaaattaaagAGAAGCTGGTTTCTACAAAAGAGCAATATCGTAACATTGTGGGATATAGGTTATGCTGCATATGCGGTCGAGAATTTCAGAGGAAAAACGATCACAAAAGGCATCTTATAGAGCATTTGCTGTCTGATGCTCTCTCCAAGTTTGTGGATAACAATGGTTTGGTATGCCATTTCTGCGGGAAGACGTTAGAAAAGCCAGATCATTTCAGGGAGCATTTAAGAGATCACGGTTCCCTACCCGTGTTCAGATGTGTTATTTGCTCTAAGTCGTTCAGCGACTCGAGTAATTTCTCCAAACATAGGAAGACGCACAATTTCCATCAACACAGGTGTATTATATGCGACAAGAAGTTTCACAGCAATGTACAGCTGGAGAAACATATGGAGATGCACGAGCACACAGACCCAATTAAATGCGAGAGTTGTGACAAGACATTCTACGAAGCGACCTCTTACAAGAAGCACGTGCGAGTAAAACATGAACGACAACAAAGATTTAACTGCACAATTTGCAGATTGAAATTCGCTTCACTCAAAGATAAATGGGACCACAGTTGGGTAGCTCACAAAATAAGGAAACAGAAAGCCGACTGCCCTATATGCCCGAAGTCCTTCAGAAAGTATCAGGATGTGAAAAGTCATATGAAGTTAGATCATAATAAAAAGGTGTCGTTTTTGACCAAACAATTGATGAAGATTGTTAAGTCTGTGGAAGATGAAGGCGCACAGGTCGGGAAGCTCGGTGATGAAATGTATGTGGTGTTTGAAGATGATGATGGTGATAACGAAGATGGTGATGTCAGGGCGTGA
- Protein Sequence
- MQEGPAPIEFNVKIEVEEFCEDFNACSESNSIVDEGNTCSTDSFTIKTEVTDEFEEIKNKDDDEQAADEGETCDDDYKKAQTSKRKPKDPKNIGAKKKSLLKKIYDLSQSSAVSVKQCKITDETVFAELEKLMQKDLSQADRMLVIETRNSWGRVAMVPHTFSHIDLQIQHVLNQWKDWCIPGKHKSSPLLYICYICRIGWWHLNDLKEHLQINHDSSEINCSMKINLQEFYLTVNSKSCPQVTTDDIAVVSDCWRCGNDFDFHMPPNNCDASAFYKCTYCNVLQFHNCTTYNEHLSSCVEYIKFLKTTKEDDDALEFSRCFVCNMILTTKKIVDEHYAKFHLVRSDLPMITVVKTCSICTIQYIEKIFHTCPRRNYSITCMHCMRRFPSRVMTELHKNANKENYRCKICNTVLKSQCMEMEHLVTHSDNFKALYKCVTCEENIFLMDELSMKQHIVIWHKKFFDKRRKFVETVVVPRNCVATSMVEQLDIVSSLSGKFEIVAKPNSNGVLEVSQVEEIDFSKKQKLKKVTTDNTTQNDASDNETECRIIENDNFVTVIDDECSADDENQVTDKIIHRNIKSEEFSDKSEGSKTTTDFIPAINIKVEKDDEIQESEEEVKYIFDKVIKEESNFNVKSTDNDDYANLLSKVFGGSHHITTDVVNIKQEPEEEEFFEDDIINLVRNAGTAESEIKIEPEVKTEPEIKQEVEQPSTSKGKRYRRRNKCRKCDTQGNRFKCQKHRAKKNFLRPSTVNCNDAYRCTKCNQDYETIEDYAYHFVEHGYDSSCPACGTELVNNSNFAMHLKMHVRYSFYKKQLLERSVNEDNNPGNTEGSIDLVYSCKECKANVDVELLFEHWEDHLTLDKQSTSNMDFNEKDLNTSLDQNLLKEIKEKLVSTKEQYRNIVGYRLCCICGREFQRKNDHKRHLIEHLLSDALSKFVDNNGLVCHFCGKTLEKPDHFREHLRDHGSLPVFRCVICSKSFSDSSNFSKHRKTHNFHQHRCIICDKKFHSNVQLEKHMEMHEHTDPIKCESCDKTFYEATSYKKHVRVKHERQQRFNCTICRLKFASLKDKWDHSWVAHKIRKQKADCPICPKSFRKYQDVKSHMKLDHNKKVSFLTKQLMKIVKSVEDEGAQVGKLGDEMYVVFEDDDGDNEDGDVRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035197;
- 90% Identity
- -
- 80% Identity
- -