Agen040356.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000565.1:48340-70877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.59 1.2e+02 5.2 1.5 1 23 448 470 448 470 0.83 2 10 0.99 2e+02 4.5 0.7 1 20 803 822 803 825 0.86 3 10 0.033 6.7 9.1 0.1 3 23 831 851 830 851 0.97 4 10 0.86 1.7e+02 4.7 4.3 3 23 950 970 949 970 0.96 5 10 0.001 0.2 13.9 2.7 2 23 986 1007 985 1007 0.96 6 10 1.7e-06 0.00034 22.7 3.2 1 23 1013 1035 1013 1035 0.99 7 10 0.0012 0.24 13.7 3.6 1 23 1040 1062 1040 1062 0.95 8 10 0.00093 0.19 14.0 1.9 2 23 1069 1091 1068 1091 0.97 9 10 1.8 3.6e+02 3.7 0.3 1 19 1097 1115 1097 1116 0.85 10 10 6.9e-05 0.014 17.6 0.4 3 23 1129 1150 1128 1150 0.96
Sequence Information
- Coding Sequence
- ATGTCAGAATCAAGTTATAAACGTGGTAGAAAAACTAAATTGGTGCCGCGTGCTTTAGACGGCGAAGATGAAATGCAGAGTCCTtcgaaaaaggaaaaaaaaatgcaacaaGGGCCTGCACCAATAGAATTCAACGTTAAAATTGAAGTAGAGGAATTTTGCGAAGATTTTAATGCTTATTCAGAGAGTAATTTAGTCGTAGACGAAGGCAACACTTGCTCTACAGACTCTTTCACAATCAAAACTGAGGTTACTGACGAATTTGAGGTTACTGACGAATTTGAGGGAATAAAAAACGATGGTGATAAAGAAGATGATGAACAAGCAGCTGATGACGGAGAAACTTGTGatgaagactacaaaaaagcactaacatcgaaaagAAAACCTAAAAACCCTAAGAATATAGGTGTAAAAAAGAAGtcgttgataaaaaaaattcacgacCTTTCACAAAAATCATCAGTTTCGGTAAAACAGTGTAAGATCACAGATGAAACAGTTTTCGCGGAACTGGAAAAATTGATGCAAAACGATTTGTCTGAAGCTGATAGAATGCTAGTTATTGAAACTAGGAATTCTTGGGGCAGGGTGGCAATGGTACCGCATACATTTAGTCATATCGACTTACAAATTCAACATATTCTTAACGAATGGAAAGAATGGTGTGTGTACGGTAAAAATAAAGGCTCCCCCTTATTGTACATATGTTATATTTGCAGAATTGGTTGGTGGCATTTAAATGATTTGAAAGAACATCTGCTAAGAAATCACGACTCTTCTGATATTAATTGTTCTTTGAAGACAAATATACAAGAGTGCTACTTAACAGTCAATTCGAAGAGTTGTACTCAGGTTATGACTGATGATATCGCCGTAGTTTCTGATTGTTTGAAGTGTGGAAACGATTATGATTTTCACAGGCCACCAAATTATTGCGAAACCGCTGCCTTTTACAAATGTACATACTGTAATATACTTCGGTTTCACACTTGCACGACTTATAATGAGCATCTAAGCTCATGTGTGGAGTACATAAAGTTTCTGAAGACAACAAAGGAAGATGATGCGTTAGAGTTTGGTCGTTGTTTCGTTTGCAATATGAATTTGACGACGAAGAAGATAGTGGACGAACACTATGCAAAATTTCATTTGGTTAGGTCTGACCTGCCGATGCCGACGGCAGCAGTAAAAACTTGTAGCTTATGCACTATTCAATACATCGAAAAAATATTCCATACTTGTCCTCGAAGGAATTATAGTATTACGTGTATGCATTGCATGCGTAGATTTCCTTCCAGAGTCATGACAGAACTCCACAAAAACGCTTACATAAAGaattataaatgcaaaatttgtaACACAGTACTAAAAAGTCAATGTATGGAGATGGAGCATCTTGTAACTCACAGCgacaatttcaaagctttatacaaATGCGTGACGTGTGAGGAGAACATTTTCTTAATGGATGAGTTATCTATGAAACAGCACATTGTGATTTGGCATAAAAAATTTTTCGACAAGAGAAGAAGATTCGTAGAAACGGTTGTGGTGCCTCGGAACTGCGTTACGACGAGTATGGTCGAGGTCGATATCGTATCTTCTCTTAGTGGAAAGTTTCAAATAGTTGCAAAACCGAACAGTAATGGTGTCTTAGAAGTCTCACAAGTTGAAGAGATAGATTTTGGTAAAAAACAGAAACTGAAAAAAGTCACAAGTGATGAATGTGATAATACAACACAAAATGATGCTAGTGATAACGAAACTGAGTGTCGAGttattgaaaatgtcaattttgTGACGGTAATAGATGATGAGTGTTCTGCTGATGATGAAAAACAAGTGACAgataaaattatacataaagATATTAAATCAGATGAATTTATTGATAAATCGGAAAGTAATATAACTACAACAGACTTGAAACCAGCAATCAATATTAAAGTGGAAAAGGATGACGAAATACAAGAATCTGTAGAGGAAGTCAAGTATATTTTTGACAAAGTTATTAAGAAAGAAtctaattttaatgttaaatcAACAGATAATGACGATTATGCTAATCTCTTATCAAAAGTATTTGGTGGTTCTCACCACATAACGACAGATGTAGTTAATATCAAACAAGAACCGGAAGAAGAGGAATTCTTCGAAGACGACATTATTAATTTAGTTAGAAACGCTGAAAGCGAAATTAAAATTGAACCGGAGGTTAAAACTGAACCAGAAATAAAACAGGAAATTGAACCGCCTGAAAAAGAACAGCCTTCAACGTCTAAAGGCAAagtttataaaagaaaatataaatgcaAAAAGTGTGACACACAAGGCAACCGCTTTGAGTGCTATAAACATAGAGCTAAGAAAAAATTTCTACGTATGGCAATGGCTAACGATGCATATAGATGCACTAAATGTAACCAGGATTATGAATCTATAGAAGATTATGCGTATCATTTCGTAGAACATGGCTATGACAATTCGTGTCCAGCCTGTGATATAGTTTTAGCGAATAATACTAACTTTGCTATGCATCTGAAAAAACATGTTCGGtattctttttataaaaagcaGTTATTGGAAAAGAGTGTTGGTAAAGATAATGAGAATACTGAAGGCAGTATAGATTTGGTGTATTCTTGCAAAGTATGCAAAGCTAATGTTGATGTGGAATTACTTTTTGCACATTGGGAAGATCATCTGACTTTAGACAGACAAAGCACAGTTAATATGGAGTTTAATGATTTGAATACTTCTCTGGACCAGGATTTGCTGAAAGAAATAAAAGAGAAACTGGTTTCTACAAAAGAGGTCTATCGTATCCGTGTTGGATATAGGTTATGCTGCATATGCGGTCGTGAATTTCAGAGGAAAAACGATCATAAAAGACATCTCATAGAGCATTTGCTATCTGATGCACTCTCCAAACACGAAGACAACAATGGTTTGGTATGCCATTTCTGCGGGAAGACGTTAGAAAAGCCAGATCATTTCAGGGAGCATTTAAGAGATCACGCTTCCCTACCCGTATTCAGATGTGTGATTTGCTCGAAGTCCTTTAGTGACTCGAGTAATTTCTCCAAACATAGAAAGACACACAATTTCCATCAACACAGGTGTATTATATGCGATAAGAAGTTTCACAGCAATGTACAGCTGGAAAAACATATGGAGATGCACGAGCATACAGACCCAATAAAATGTGAAAGTTGCGACAAGACATTCTTCGAAGCGACCACTTACAAAAAGCACGTCCGAACAAAACACGAACGACAACAAAGATATAACTGCACAATTTGCAGATTGAAATTCGCTTCACTCAAAGACAAATGGGACCATAGTTGGGTAGCCCACAAAATAAGAAAACAGAAAGCCGATTGTCCTATATGTCCGAAGTCATTCAGAAAGTACCAAGATGTAAAAAATCATATGAAGTTAGATCACAATAAGAAAGTGTCGTTTTTGAGCAAACAATTGATGAAGATTGTTAAGTCGGTCGAAGATGAAGGTGCACAGGTCGGGAAGCTCGGTGATGAAATGTATGTCGTGTTtgaagatgatgatgGTACACCCCCGTGGGAGCTGGAGGCACGGGTCCTCAGCAGGGCGTACCTGGACAAGAGGGAAGCAAGCAGGCAAGGGACACGGTTGGCTCCGGCTGAGGTTAGACAGCGGGCGGAGGAGCAGCTACTGGTAGAGTGGCGCCTCCAGTTGGAGACTCCGTCAGCCGGCGTGCGGACGGTGATGCGGTGCGCCCGCTCCTGGTGGAGTGGATGGAGCTGCGTCATGGAACGCTGA
- Protein Sequence
- MSESSYKRGRKTKLVPRALDGEDEMQSPSKKEKKMQQGPAPIEFNVKIEVEEFCEDFNAYSESNLVVDEGNTCSTDSFTIKTEVTDEFEVTDEFEGIKNDGDKEDDEQAADDGETCDEDYKKALTSKRKPKNPKNIGVKKKSLIKKIHDLSQKSSVSVKQCKITDETVFAELEKLMQNDLSEADRMLVIETRNSWGRVAMVPHTFSHIDLQIQHILNEWKEWCVYGKNKGSPLLYICYICRIGWWHLNDLKEHLLRNHDSSDINCSLKTNIQECYLTVNSKSCTQVMTDDIAVVSDCLKCGNDYDFHRPPNYCETAAFYKCTYCNILRFHTCTTYNEHLSSCVEYIKFLKTTKEDDALEFGRCFVCNMNLTTKKIVDEHYAKFHLVRSDLPMPTAAVKTCSLCTIQYIEKIFHTCPRRNYSITCMHCMRRFPSRVMTELHKNAYIKNYKCKICNTVLKSQCMEMEHLVTHSDNFKALYKCVTCEENIFLMDELSMKQHIVIWHKKFFDKRRRFVETVVVPRNCVTTSMVEVDIVSSLSGKFQIVAKPNSNGVLEVSQVEEIDFGKKQKLKKVTSDECDNTTQNDASDNETECRVIENVNFVTVIDDECSADDEKQVTDKIIHKDIKSDEFIDKSESNITTTDLKPAINIKVEKDDEIQESVEEVKYIFDKVIKKESNFNVKSTDNDDYANLLSKVFGGSHHITTDVVNIKQEPEEEEFFEDDIINLVRNAESEIKIEPEVKTEPEIKQEIEPPEKEQPSTSKGKVYKRKYKCKKCDTQGNRFECYKHRAKKKFLRMAMANDAYRCTKCNQDYESIEDYAYHFVEHGYDNSCPACDIVLANNTNFAMHLKKHVRYSFYKKQLLEKSVGKDNENTEGSIDLVYSCKVCKANVDVELLFAHWEDHLTLDRQSTVNMEFNDLNTSLDQDLLKEIKEKLVSTKEVYRIRVGYRLCCICGREFQRKNDHKRHLIEHLLSDALSKHEDNNGLVCHFCGKTLEKPDHFREHLRDHASLPVFRCVICSKSFSDSSNFSKHRKTHNFHQHRCIICDKKFHSNVQLEKHMEMHEHTDPIKCESCDKTFFEATTYKKHVRTKHERQQRYNCTICRLKFASLKDKWDHSWVAHKIRKQKADCPICPKSFRKYQDVKNHMKLDHNKKVSFLSKQLMKIVKSVEDEGAQVGKLGDEMYVVFEDDDGTPPWELEARVLSRAYLDKREASRQGTRLAPAEVRQRAEEQLLVEWRLQLETPSAGVRTVMRCARSWWSGWSCVMER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036150;
- 90% Identity
- -
- 80% Identity
- -