Astr031781.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- topi
- Assembly
- GCA_950108535.1
- Location
- OX467328.1:662442-665752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.3e-06 0.00076 20.8 0.1 2 21 102 121 101 122 0.95 2 18 0.19 17 7.1 0.2 1 23 153 176 153 176 0.96 3 18 7.4e-05 0.0067 17.8 0.1 1 19 181 199 181 201 0.97 4 18 0.64 59 5.4 3.9 1 20 206 225 206 227 0.90 5 18 0.00045 0.041 15.3 0.2 1 23 240 263 240 263 0.95 6 18 0.00023 0.021 16.3 0.8 1 23 269 291 269 291 0.98 7 18 1.6 1.5e+02 4.1 0.3 1 23 325 348 325 348 0.88 8 18 0.0015 0.13 13.7 1.1 3 23 358 379 357 380 0.96 9 18 0.00049 0.045 15.2 1.2 2 21 492 511 491 512 0.93 10 18 2.1 1.9e+02 3.7 0.3 3 23 519 540 519 540 0.96 11 18 0.16 15 7.3 1.1 1 23 545 568 545 568 0.94 12 18 1.1e-05 0.001 20.4 0.4 2 23 574 595 573 595 0.96 13 18 0.86 79 5.0 0.6 2 20 599 617 599 619 0.92 14 18 0.00024 0.022 16.2 0.3 1 23 645 668 645 668 0.95 15 18 0.00033 0.03 15.7 0.7 1 23 674 696 674 696 0.93 16 18 0.077 7.1 8.3 0.1 1 23 702 724 702 724 0.97 17 18 0.0029 0.27 12.7 0.5 1 23 730 753 730 753 0.95 18 18 0.00068 0.062 14.7 1.0 3 23 761 782 759 782 0.95
Sequence Information
- Coding Sequence
- ATGACATGGTTTCAGGTGGAGTTTGACGGGGGCTTGCCACAAGGACTGTGCACATTGTGCTCAGAGAGCGCCATCGCCGCTATAAACTTCCGACAGCTTTGCAAGGAGTCCAACAACCAGTGGAAGCAAGTCACCTCCATTGTGGACAATATTGCTCCCCCGTCGAAAGAAGATGCCACCTATTACATATTCTACAATAGCGATGGTCGCTCAAGTCCGACAGTGAAAGTGGTAAAAAAGCGGCCCGCTTCAGTCGAACCTGAAACGAAGCCAGCGAAAATGGCTCGCCTGTTACCTTCAATGCAATGTCCTGATTGCGGCAAACAATTCCCCAGTCCCGTTAATTTAAACTCCCATTTGAAGAACTCAGTGAAAAGAGCGTGTGACTTATGTGGTCTCCTTTTTGACAAGCCAAAGTTTCCACGACACTTGCATAAGGCTCACAACAAGATTGTGTATCCATGCAACTCCTGTCATCAAATATTTGAGGAAGAGATTTCTTTGGATTTACACTTGCTTAAAGCGCATGGAACGAATTCTTATGAATGTAAGGTGTGCGGGAAAGGGTTCAGCACTGAGAGAGCTCTCACAGCACATTCCTACTGTCACTCACTATTCCTCTGCACATCATGCGGTCGAACATTCGAGAACCGGAATTGTTACATATACCATCGCCACCAATGTCAGCCAGAAACTCATAGTTCAGAAACGAACGAATACATATGTGACGTTTGTGGCAACTCCTACACTAAAAAGCCTTCCTTGAGAATTCATATAATCCAGAAGCATTTAAACGTCCTACCCTATGTTTGCGCAACTTGTGGTAAACGCACCTCCACCATAGCCCATTTACGATCGCACGAGAAAGTGCATACAATTCATAGAAGCACGTTCAATTGTCATTGCGGAGCTGTTATGCGTACAGAATTAGGTTATCGGTTGCATTTACGTAACCATACTGGAGAAAAGCCATATGAATGCGATGAGTGCGGCGATAGGTTTCTGTCAGCTTCTAGAAGGTTGGATCATATTAAACGTAGGCATAGGCCTACTAAAGATATGCCGCATGGTTGCAAAGAGTGTTCCGCGCGTTTCATCAGACCGTTTGAGTTGAGGAAACACTATTTGTCTGTTCATCACATTATTGAAGAAGAGAATTTCTGCCCGAAAGGAGCATGCGTGACGTGCGCCTCGGCTGCTATGGCTGCCCAAGAATTCCGAGTATTCGTACGCAACTCGCAAAGCATGTGGCATAAAGCAATAAATGCTCTCAACGAAGTGCCAAAATCCTATGGGCCTTCAGTCAGATCTCTATGCTCATTTGTAAAACCAGACAACTTTCAAACCCACACAGTTAAAGACTACACTGGCGGTGACTCAAAACAAATACTGAACAGATTAAGGAACCGCCTGACTAAAAGGAAGGCTGAAATCGAAAGGAAAGCCAGGACTCCGCGCTCTGGGCCGCCCTGCGACTGTCCAGACTGTGGCAAAAACTTTTTCAGCCCGTACTTTTTGCGGTTGCACTTAAAAAACAGTGGATTCAAAGAAGGTTGCTTGCATTGCGGTGCGGTTTTGGCAAGAGGCAATGAAATGAAGGAGCACCTTTCTAAAATTCACGGCGAAACGTTGTTCCTTTGCAAGAGATGCCCGGTGTTGTTCACGAGCGACATAAAGCTAAAGAAGCACAGTAGAAAAGCTCATAAACCTGGCGCTTGGACGTGTAATGACTGTGGAAGATCTTTTCCGAGTAAGACCTCGCTCGAGATGCACTCGCAAATGCACACGGTTAGGACATGCAGGGCTTGCGGTGCGCAGTTCACGAACCGCGGTTGTTACAGGGAGCACAGGGCTCTGTGCGAACCGAACGCGCGACCAGACAGGCATTCCCTTCCGCGCAACAAAAGATCGAACATTCGAGATCCCGCAACTTTTACGTGCGATTATTGTGGCAAAACTTACCTTTCGCGACCCCAACTTAAAAACCATATAATTTGGATACATATGGACGTTAGGCCACACCAATGTCAGTGGTGTGGGAAAAGATTTTATACCCCTTCCCGATTGGCGGAGCATTCGGTGGTGCATACGCGGGAAAGGAATTTCGAATGCGACATTTGTGGCGCCAAATTGGTGTCCAAAATGGCGGCTGTTTATCACAGGCGAAGGCATACTGGAGAAAAGCCTTATAAGTGTGAAGATTGCGGCGAAGGTTTTATATCGTCATCGAGGAGGTCGGAACACGCGAAAAGGAGGCATGGGAGAGGacaaaaaatacattgtttGCAGTGTCCATCTACTTTTGTTAGGAAATATGAGCTTTTAAAACATATGGAAAAGGCACATAGGACTCAAGGGCAGAACACAGAGGCCATAAATAAAGACCTGGTTAGCTACGAAATTGTAGGTATATAA
- Protein Sequence
- MTWFQVEFDGGLPQGLCTLCSESAIAAINFRQLCKESNNQWKQVTSIVDNIAPPSKEDATYYIFYNSDGRSSPTVKVVKKRPASVEPETKPAKMARLLPSMQCPDCGKQFPSPVNLNSHLKNSVKRACDLCGLLFDKPKFPRHLHKAHNKIVYPCNSCHQIFEEEISLDLHLLKAHGTNSYECKVCGKGFSTERALTAHSYCHSLFLCTSCGRTFENRNCYIYHRHQCQPETHSSETNEYICDVCGNSYTKKPSLRIHIIQKHLNVLPYVCATCGKRTSTIAHLRSHEKVHTIHRSTFNCHCGAVMRTELGYRLHLRNHTGEKPYECDECGDRFLSASRRLDHIKRRHRPTKDMPHGCKECSARFIRPFELRKHYLSVHHIIEEENFCPKGACVTCASAAMAAQEFRVFVRNSQSMWHKAINALNEVPKSYGPSVRSLCSFVKPDNFQTHTVKDYTGGDSKQILNRLRNRLTKRKAEIERKARTPRSGPPCDCPDCGKNFFSPYFLRLHLKNSGFKEGCLHCGAVLARGNEMKEHLSKIHGETLFLCKRCPVLFTSDIKLKKHSRKAHKPGAWTCNDCGRSFPSKTSLEMHSQMHTVRTCRACGAQFTNRGCYREHRALCEPNARPDRHSLPRNKRSNIRDPATFTCDYCGKTYLSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPSRLAEHSVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCGEGFISSSRRSEHAKRRHGRGQKIHCLQCPSTFVRKYELLKHMEKAHRTQGQNTEAINKDLVSYEIVGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284783;
- 90% Identity
- iTF_00284783;
- 80% Identity
- -