Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467328.1:6129034-6136713[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 43 0.001 0.095 14.2 0.4 5 23 2 21 1 22 0.93

2 43 0.00075 0.069 14.6 0.8 1 23 26 49 26 49 0.93

3 43 0.0044 0.41 12.2 0.4 2 23 55 77 54 77 0.96

4 43 0.066 6 8.5 0.4 1 23 117 139 117 139 0.97

5 43 0.13 11 7.6 0.1 2 23 167 189 166 189 0.91

6 43 0.23 21 6.8 2.5 2 23 210 232 209 232 0.94

7 43 0.00028 0.026 15.9 5.7 1 23 237 259 237 260 0.95

8 43 0.00062 0.057 14.9 0.3 1 23 264 287 264 287 0.95

9 43 0.15 14 7.3 0.3 3 23 291 312 290 312 0.96

10 43 1.2 1.1e+02 4.5 0.1 2 19 319 336 318 339 0.93

11 43 0.017 1.6 10.3 1.2 1 23 393 416 393 416 0.90

12 43 1.1 1e+02 4.7 0.1 2 23 445 467 444 467 0.94

13 43 0.0037 0.34 12.4 0.5 1 23 489 512 489 512 0.97

14 43 0.00026 0.024 16.1 0.2 3 23 519 540 518 540 0.95

15 43 0.00015 0.013 16.8 2.2 1 23 545 568 545 568 0.92

16 43 0.00014 0.013 16.9 0.4 2 23 574 596 574 596 0.96

17 43 0.00017 0.016 16.6 4.4 1 23 600 623 600 623 0.97

18 43 0.34 32 6.2 1.2 2 23 630 651 629 651 0.95

19 43 0.25 23 6.7 0.5 1 20 657 676 657 678 0.80

20 43 0.0056 0.51 11.9 1.8 1 23 724 746 724 746 0.94

21 43 1.1 1.1e+02 4.6 0.2 3 23 775 796 773 796 0.90

22 43 0.029 2.6 9.6 0.1 2 23 817 839 816 839 0.95

23 43 0.005 0.46 12.0 2.0 1 21 844 864 844 867 0.94

24 43 0.0043 0.39 12.2 0.4 1 23 872 895 872 895 0.95

25 43 0.0014 0.12 13.8 0.6 2 23 898 920 898 920 0.95

26 43 1.1 1e+02 4.6 2.5 2 20 927 945 926 947 0.92

27 43 0.0027 0.25 12.8 0.8 1 23 1003 1026 1003 1026 0.93

28 43 4.4 4.1e+02 2.7 0.1 2 23 1099 1122 1098 1122 0.93

29 43 3.3e-05 0.003 18.9 0.2 3 23 1129 1150 1128 1150 0.94

30 43 0.031 2.9 9.5 5.7 2 23 1155 1177 1154 1177 0.94

31 43 0.011 0.99 11.0 4.4 1 23 1182 1205 1182 1205 0.97

32 43 5.9e-05 0.0054 18.1 4.2 1 23 1209 1232 1209 1232 0.97

33 43 0.0007 0.064 14.7 0.3 2 23 1239 1260 1238 1260 0.96

34 43 0.6 55 5.5 0.1 1 10 1266 1275 1266 1280 0.87

35 43 8.8 8.1e+02 1.8 0.2 3 23 1326 1346 1324 1346 0.94

36 43 0.012 1.1 10.9 0.6 2 23 1422 1444 1422 1444 0.96

37 43 0.0071 0.65 11.5 1.9 1 23 1449 1472 1449 1472 0.96

38 43 0.31 29 6.4 3.1 1 23 1477 1500 1477 1500 0.93

39 43 0.00036 0.033 15.6 1.3 1 23 1505 1528 1505 1528 0.94

40 43 0.00048 0.044 15.2 0.1 2 23 1536 1558 1535 1558 0.97

41 43 0.025 2.3 9.8 0.1 2 23 1565 1586 1564 1586 0.96

42 43 3e-07 2.7e-05 25.3 0.5 1 23 1592 1614 1592 1614 0.97

43 43 3.9e-05 0.0036 18.6 1.6 3 23 1622 1643 1620 1643 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	43	0.001	0.095	14.2	0.4	5	23	2	21	1	22	0.93
2	43	0.00075	0.069	14.6	0.8	1	23	26	49	26	49	0.93
3	43	0.0044	0.41	12.2	0.4	2	23	55	77	54	77	0.96
4	43	0.066	6	8.5	0.4	1	23	117	139	117	139	0.97
5	43	0.13	11	7.6	0.1	2	23	167	189	166	189	0.91
6	43	0.23	21	6.8	2.5	2	23	210	232	209	232	0.94
7	43	0.00028	0.026	15.9	5.7	1	23	237	259	237	260	0.95
8	43	0.00062	0.057	14.9	0.3	1	23	264	287	264	287	0.95
9	43	0.15	14	7.3	0.3	3	23	291	312	290	312	0.96
10	43	1.2	1.1e+02	4.5	0.1	2	19	319	336	318	339	0.93
11	43	0.017	1.6	10.3	1.2	1	23	393	416	393	416	0.90
12	43	1.1	1e+02	4.7	0.1	2	23	445	467	444	467	0.94
13	43	0.0037	0.34	12.4	0.5	1	23	489	512	489	512	0.97
14	43	0.00026	0.024	16.1	0.2	3	23	519	540	518	540	0.95
15	43	0.00015	0.013	16.8	2.2	1	23	545	568	545	568	0.92
16	43	0.00014	0.013	16.9	0.4	2	23	574	596	574	596	0.96
17	43	0.00017	0.016	16.6	4.4	1	23	600	623	600	623	0.97
18	43	0.34	32	6.2	1.2	2	23	630	651	629	651	0.95
19	43	0.25	23	6.7	0.5	1	20	657	676	657	678	0.80
20	43	0.0056	0.51	11.9	1.8	1	23	724	746	724	746	0.94
21	43	1.1	1.1e+02	4.6	0.2	3	23	775	796	773	796	0.90
22	43	0.029	2.6	9.6	0.1	2	23	817	839	816	839	0.95
23	43	0.005	0.46	12.0	2.0	1	21	844	864	844	867	0.94
24	43	0.0043	0.39	12.2	0.4	1	23	872	895	872	895	0.95
25	43	0.0014	0.12	13.8	0.6	2	23	898	920	898	920	0.95
26	43	1.1	1e+02	4.6	2.5	2	20	927	945	926	947	0.92
27	43	0.0027	0.25	12.8	0.8	1	23	1003	1026	1003	1026	0.93
28	43	4.4	4.1e+02	2.7	0.1	2	23	1099	1122	1098	1122	0.93
29	43	3.3e-05	0.003	18.9	0.2	3	23	1129	1150	1128	1150	0.94
30	43	0.031	2.9	9.5	5.7	2	23	1155	1177	1154	1177	0.94
31	43	0.011	0.99	11.0	4.4	1	23	1182	1205	1182	1205	0.97
32	43	5.9e-05	0.0054	18.1	4.2	1	23	1209	1232	1209	1232	0.97
33	43	0.0007	0.064	14.7	0.3	2	23	1239	1260	1238	1260	0.96
34	43	0.6	55	5.5	0.1	1	10	1266	1275	1266	1280	0.87
35	43	8.8	8.1e+02	1.8	0.2	3	23	1326	1346	1324	1346	0.94
36	43	0.012	1.1	10.9	0.6	2	23	1422	1444	1422	1444	0.96
37	43	0.0071	0.65	11.5	1.9	1	23	1449	1472	1449	1472	0.96
38	43	0.31	29	6.4	3.1	1	23	1477	1500	1477	1500	0.93
39	43	0.00036	0.033	15.6	1.3	1	23	1505	1528	1505	1528	0.94
40	43	0.00048	0.044	15.2	0.1	2	23	1536	1558	1535	1558	0.97
41	43	0.025	2.3	9.8	0.1	2	23	1565	1586	1564	1586	0.96
42	43	3e-07	2.7e-05	25.3	0.5	1	23	1592	1614	1592	1614	0.97
43	43	3.9e-05	0.0036	18.6	1.6	3	23	1622	1643	1620	1643	0.97

Sequence Information

Coding Sequence: ATGTATTGTGGAAAGCCTTTCAAAAGTCTATCTACTTTAAAAGCACACATAGCGCAGAGACATCACCCCGATGGCTACAAATGTAGTATTTGTAACTTGGAGTTCAGTACAAAGCACCTTCTAATTGGACACACTGCTAATGTGCATAGTAAAAAGAAAGTGAAATGTAGAGTGTGTCCGGAGAAGTTTACAACTCGATACGTTATGATGCAGCACATGATTAAAGCCCATGGTAAAGGTTATGAAAATGCGCCAGCTAAAGGGCAACATGCTAGTAGAAAGCGGAGGCGAAATCTGCAAATATTGTTCAACTACACCTCGATGATACCTTTTAAATGGCGCGGCAAATACATGTGCTTTTACTGTGGAGATGACGTAGATGACTATTCTGAGCTCAAGAAGCATACTAAAGCCCATGGCGTCTGCTCAGACAGGGACAGAGCTATTAAACTTGTCAAATCCAGAGATTCTGAAGTTAAAATTGATGTGTCGGATATGACTTGTGAAATATGCAACGAGTCTTTCGGTTACTTTGATGAAATTATAGCCCACTTGACGTTGAAACATCAACTACCGTATGACAGAGACGCTGACACTACCATCACGACTTATCGCCTGCTAGATCTAAAATGTGTTTTCTGTGAGGATACTTTCGATTCTTTTTCTAAACTTATTAAACATATGAACCATACCCATCCAATCAATTGTTTCATATGCCACGATTGTGACAGGAAATTCAATAAAAAGAGAGATCTCGAATCGCACTTCCGAATTCACCACAGAAAGGAATATAATTGTAAAAAGTGTCCACTGAATTTCCCTAGCAATGCTGCGTTACAGAAGCATAAAGCACGCGCCCACATATCTTTGTGTAACATCTGCTTTCAACCATTCCCTTCGAAAAGCAAAAAAGTTGATCATATAAAACAAGCTCACTTTGATATAGACCGTCTCGAATGTGGTTTTTGTCAGAAGAAACTCAGCACCAAACTAGCCCTTTTAAATCACGCTGGTAAATGCAATATGCAGCAATGTAGAGATGATATGTTAACGTACGAACATCCTAGACCTCTCGATGATGACATTAAAAAGCCTTCTCTAGCAGAAATAAGAAGCAATATTGCTTGCATAGTGAACATGTCCACTGCACTGCCCTTCAAATACTTTATGAACAAATTCAGATGTTTTTATTGTCCCAAGGACTTTATTGAGTGTGATGCACTTAAAGAACACACAGTTTTAGAACATCCGTCCTGTAATAGTAAATTGAAATGCCTTAGGCTAAGGAATAGAGAGCAtggcattaaaattaaaatagacatTTCGTCTCTTTCTTGCAAAATGTGTTTTGAACCAATGCAAGACTTGGAAAATTTGATAAACCATTTGATCACTGAACATAAAGCACAGTACGATAAGTCGGTTGACAACAATATGCAACCATTCAAACTTATTAGGGATAATTTTGCGTGCCCTTTTTGCGTGGAAGTGTATAGATATTTCAGTACTTTATTAAAACACATCAGCACTAGTCATACGGAAAATAGAAACATATGTTCGTATTGCGGTATGTCTTTTAGAACTGATCCCAGCCTGCGAGCGCATATCAATTTACGGCATAAACCCAACGGCCATAAATGTAACGTTTGCGATAAAGATTTTACTACCAGACACGCCTTGCGTGACCATTTAGGCAACGCTCACGGCAACAAAGTTGCTAAATGCCAAGTATGTTCAGAAAGATTCACTTCTCAATACGCAATGCAGAGGCACATGATCATCGTACATGCCACTGGACATAAATGTTCCTATTGTGGCAAAATGTTCACGAAGAATTCCTTCATGGTCAACCATGTACGCCGCACGCATCTCAAAGAGAAAAACGTGGAATGCACGGTGTGTTTCGAAAGATTTTTCGACATTCATCTCTTGAGAATGCACACAGTCAAGCACGTCGGCGAAAGAAATTTCCACTGCGATATATGCGGAAAGAAATTCCTCTGGAAGAAAAATCTCAGAGGGCACATAGGCACATTGACACCGAGAAATTTCTTTTCAGATGAAAACGCTCCGGCTCCTTACGAGGGATGTGCCTCTGAGCGCAGGAggaaaaacttgaaaatattATTCAACAACACTACGGTATTGCCATTCAAATGGCGCGGCAGATTCCTTTGCTTCTACTGCCCTAAAACTTATACAGAGTATACGGAATTAAGAAATCATACCACTTCACATGGCTCGTGCTCAACTAAAGATTATTCCTTGAAAGTGATAAAAGGAAACCATATAGAAATCAAATTAGATGTTTCTAAAATATGCTGTGAATTATGTAATGAACCTTTCGgaaatttgaatgaaataattcaACATTTAATCGGTAAACATAATTTGGAATATGATAATACTGTTGACATACCCTTCCAAGTTTATAGATTAGTTGATATGCGATGCTTATATTGTGAAGAACAGTTCACTTACTTTGGTTACTTGATAAGTCACGTGAATATTGCTCATCCACAAAACTGCTTCATATGTGACGATTGTGGAGTCACTTTCAATAAGAAAAGAGATCTGGCCGTTCACTTTAGATGCTACCACAGATCTGGCGGTTATCCTTGCGATCAATGCGTGAAGATATTTGACAATTTCTACCTGTTACGAACTCATCGAAACGCCGTCCATTACAGGAAATGTAAGAACTGTAATTTGCGTTTTGTTTCTCTGGCTCTTTTGCAGAAACATATCTCGTTGGAGCATCCTGAGGACGGTAGTTTAAAATGCGAATTTTGCGCGAAGCAGTGCCGTTCCCAGCAGGGCTTGAATCAACATAAAAGTAAATGCAGTGTAAAATTAATTGTCGCCTCAGACGAACCCACTGATAAATTCTTATCGACTGAAGGCAATTTCGAaccaaaaaagaaacaaaacgttAAACAGATCAGACAAAACATTCAATGTGTCCTGAATATGTCCACAGCCATCCCGTTCAAATTCTTCTCTAGTTACTCCTGTTTTTATTGCGCGAAAAAATTCGTTAATTTTGATGAACTTAGAAATCATACAGGCATAGAACACCCAGTATGTGATTTAAAGTCAAAATCTATGAGGAGATGTAAAGGTGAACGAGTCAGTGTTAAAATAGACATAAACTCCTTAAATTGTAAAGTTTGCTGTCAAAAAATGGACGATCTGAACACATTGATCGATCATTTAGTTGATGAGCATAAGGCGGATTACGACAGATCAGTAGAAGGCTGCTTAGAGCCATTCAGAATCACGAAAGACAGTATTCCTTGTCCGCAATGCCCAGATCGTGTTTTCCGCTACTTCGGAATCCTCCTCCGCCACTTGAACTCTGAGCACAGTAATAATAACAGAATCTGCGATTTCTGCGGTCGCAGTTTCAAAAGCGCTGCGAATTTAAACGTCCACATATCTTATACACACACGGGGTcctgcgaatgtaatatttgcGGTGTTAAATATAAAAACCAGTGGTGTTTGGCGAGACACCGAGCTAAGTGCCATAACGCTAAAGATTACAAATGCTCGAAATGTCCAGAGCAGTTCCAGTCTCAATATCATAAGCAAAAGCATTTAATTAAGATGCATAATATAGGGCATAAGTGTGAGCAATGTGGAAAGATGTTTACGCGAAATTCTTTTATGAAAGACCACGTAAGGAGGACGCATTTAAAAGAGAAGAATGTGGTATGTTCTGTTTGTAATGAGAAGTTCTTTGACAACTACCTTTTGAGGATGCATATGGTCAGGCATGAGGGGGAGAGACGATTCAGTTGTTCTGTTTGCGGGAAAGCCTTCTTAAGGCGGAGTGCAAAGCTCGGCACATTGGAGGACAAAGATAAGAAAACGGAATTGGCACATAAACTACTAGTAAAACGGAGAAATATAGAATACGTGTTGCTGTACAGTAACGTGACTCCATTCTTGTGGTATAAGAGCAAATATTGGTGCTTCTTTTGTTCGGAGCCTATGAAAGACCCCGCCACACTGCGAGAGCACACCGTAAAACATACATCCGACAATTTAGAATTAGTCGTACACGATAGAACTAAGAATAATAGGAATAAAGACGCAGCTGTCAAAATTGATGTAACAAATCTCATGTGCAcgctttgtatgaaaaatatggCGAATTTGGAGGAATTGATACACCATTTGATAATAGCCCACGATGCAGAATACGATGTGAGCGCACCTAATTGTCTCCTTCCTTTCAAATTGGATAAAGATCAACCTACTTGCCCTACTTGCGATATGAAGTTTGTGTTCTTCGAATATCTTCTACGCCATGCTAATAAATACCACCTCTCTCACTCTTACATGTGTGACGTTTGTGGCACCAGTTTCCAAGGGGAAAACCATTTGAAGATGCACAATAGATACTATCATAGGGAAGGAGGTTATACGTGCGACCATTGTGGCCTGGGCTGTTCTACTCTATCCAAGAAAATGCTTCACGAAAAAAACGTTCATTTAGTCAACCTCTTTACTTGTCCTCACTGTCCCGAGACTTTTAAAAGCCTGTATAACAAGAAGATTCATTTAGCGAACGTTCACGGAGTAgaggaattgaaaataaaatgtccGTATTGCCCGAAAGTATATCCCCAAGAAAGTATAATGTCTCGGCACATGAGGCGAGTGCATTTGAGAGAAAAGAATGTAGAATGTGAAGTCTGCGCCGAAAAGTTCTTTGGACCTTACGACTTGAAGCTACACATGGTGAAACATAACGGAGAAAAGAAGTTTATATGCAGTGTGTGCGGGAAAAAGTTCGCCAAAAAGAGCAATTTGAATGCTCATCAGAATATCCACACTGGGGAGAAACGCTTTGGTTGCTCGatttgtaataagtcatttgcTCAACAGACTTCATATAAGATGCATATGCGGAATAGACACGATAATGTAAATAATACGAATGTTGAAGAACGGCAGGTTGAGATGGTTAAAGTGGACTTTATTGTTGATGATTTAAATTGTGAAGTCATTCCCGGACAATGA
Protein Sequence: MYCGKPFKSLSTLKAHIAQRHHPDGYKCSICNLEFSTKHLLIGHTANVHSKKKVKCRVCPEKFTTRYVMMQHMIKAHGKGYENAPAKGQHASRKRRRNLQILFNYTSMIPFKWRGKYMCFYCGDDVDDYSELKKHTKAHGVCSDRDRAIKLVKSRDSEVKIDVSDMTCEICNESFGYFDEIIAHLTLKHQLPYDRDADTTITTYRLLDLKCVFCEDTFDSFSKLIKHMNHTHPINCFICHDCDRKFNKKRDLESHFRIHHRKEYNCKKCPLNFPSNAALQKHKARAHISLCNICFQPFPSKSKKVDHIKQAHFDIDRLECGFCQKKLSTKLALLNHAGKCNMQQCRDDMLTYEHPRPLDDDIKKPSLAEIRSNIACIVNMSTALPFKYFMNKFRCFYCPKDFIECDALKEHTVLEHPSCNSKLKCLRLRNREHGIKIKIDISSLSCKMCFEPMQDLENLINHLITEHKAQYDKSVDNNMQPFKLIRDNFACPFCVEVYRYFSTLLKHISTSHTENRNICSYCGMSFRTDPSLRAHINLRHKPNGHKCNVCDKDFTTRHALRDHLGNAHGNKVAKCQVCSERFTSQYAMQRHMIIVHATGHKCSYCGKMFTKNSFMVNHVRRTHLKEKNVECTVCFERFFDIHLLRMHTVKHVGERNFHCDICGKKFLWKKNLRGHIGTLTPRNFFSDENAPAPYEGCASERRRKNLKILFNNTTVLPFKWRGRFLCFYCPKTYTEYTELRNHTTSHGSCSTKDYSLKVIKGNHIEIKLDVSKICCELCNEPFGNLNEIIQHLIGKHNLEYDNTVDIPFQVYRLVDMRCLYCEEQFTYFGYLISHVNIAHPQNCFICDDCGVTFNKKRDLAVHFRCYHRSGGYPCDQCVKIFDNFYLLRTHRNAVHYRKCKNCNLRFVSLALLQKHISLEHPEDGSLKCEFCAKQCRSQQGLNQHKSKCSVKLIVASDEPTDKFLSTEGNFEPKKKQNVKQIRQNIQCVLNMSTAIPFKFFSSYSCFYCAKKFVNFDELRNHTGIEHPVCDLKSKSMRRCKGERVSVKIDINSLNCKVCCQKMDDLNTLIDHLVDEHKADYDRSVEGCLEPFRITKDSIPCPQCPDRVFRYFGILLRHLNSEHSNNNRICDFCGRSFKSAANLNVHISYTHTGSCECNICGVKYKNQWCLARHRAKCHNAKDYKCSKCPEQFQSQYHKQKHLIKMHNIGHKCEQCGKMFTRNSFMKDHVRRTHLKEKNVVCSVCNEKFFDNYLLRMHMVRHEGERRFSCSVCGKAFLRRSAKLGTLEDKDKKTELAHKLLVKRRNIEYVLLYSNVTPFLWYKSKYWCFFCSEPMKDPATLREHTVKHTSDNLELVVHDRTKNNRNKDAAVKIDVTNLMCTLCMKNMANLEELIHHLIIAHDAEYDVSAPNCLLPFKLDKDQPTCPTCDMKFVFFEYLLRHANKYHLSHSYMCDVCGTSFQGENHLKMHNRYYHREGGYTCDHCGLGCSTLSKKMLHEKNVHLVNLFTCPHCPETFKSLYNKKIHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCAEKFFGPYDLKLHMVKHNGEKKFICSVCGKKFAKKSNLNAHQNIHTGEKRFGCSICNKSFAQQTSYKMHMRNRHDNVNNTNVEERQVEMVKVDFIVDDLNCEVIPGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00683544;
90% Identity: -
80% Identity: -