Astr012279.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950108535.1
- Location
- OX467309.1:18125020-18139079[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.32 1.2e+04 -3.7 0.2 238 280 53 95 43 96 0.57 2 5 1.1e-17 3.9e-13 50.4 14.3 1 44 114 157 114 171 0.87 3 5 2.7e-06 0.098 12.9 0.2 12 54 161 202 158 235 0.73 4 5 2.7e-60 9.9e-56 190.2 9.8 23 297 306 585 302 588 0.81 5 5 0.45 1.6e+04 -4.2 12.2 1 44 584 627 584 657 0.69
Sequence Information
- Coding Sequence
- ATGGGCAAGCGGTCGAAAATGGCTACGCCTAATAATAGTGACGAGGAAAGTGGTGGTGCATTCACTGACGGTGACTTCGACGATACAGACGAAGAGACAGTCGTCGAAAAAATAGGAGACAAATCACAAATTCCTGTAAATGAAACTGTAAATACAGATGTTCATAAAGAAAACGGGCATTTGTCTCGCCAACATTCTAATTATTATGAACAAGCTAAAGTTAATGGACATAAAAATGATGAAAGTGGCCAAGGAGAAGCTGCCGTTGACTTACGAAGAGATTCCCATGGCGACCAGAATCCGTCAATAGTTGGGATCCTTGGTGATCAACAAAACCATGCAGAACAGCGACTTGCGGCGCGGCGGGCAGCGCGTGCGGAGGCGCGGGAGATCCGCATGCGGGAACTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGCTCATGTGCTGGAGCGGCAGCAGCGCGAACAAGAGGACCATGGCGACAAGGCGTACGACATGTATGGCAGCGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGGTGCGTCTACTACATTACTCTGTAAGCTCATGTGCTGGAGCGGCAGCAGCGCGAACAAGAGGACCATGGCGACAAGGCGTACGACATGTATGGCAGCGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGGTGCGTCTACTACATTACTCTGTTAGCTCATGTGCTGGAGCGGCAGCAGCGCGAACAAGAGGACCATGCCGACAAGGCGTACGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGGTGCGTCTACTACATTACTCTGTTAGCTCATGTGCTGGAGCGGCAGCAGCGCGAACAAGAGGACCATGCCGACAAGGCGTATGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGAATCGGTGGGGCGGCGCGGCGGATCGCGGCTGGCGAGCCTGGGCtcggcgccgctgcactcgccgCGGCGCAGCTCCGAGGATTCCGCCGACGACGCCTTCAGTATTAAGGATCTCAGGcacGAGCTGAAAGAGATGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCCCAGATGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAGTACGCGCAGCTACAGCGCGAGCACAAAGAGAAGTGTTCAGCCCACGAGCGGTTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGTGCGCGGCGCGGGACGCCGTGCGCGCGCGGGACGCCGCCGCCGCGCACGCGGGCTACGCCTTCGTCGACGCCGCGCTCAAGCCCGACGCGGGGGCGAACGGGGAGGACAGCGCGCCTGGGTTCGGGTCCGTGCCGCCGCTGGCGCTAGTGTCGCACCAATCCGAGCAGATGCTCAACGAGGCCGGCGAGGGAACATTGGACGTGCGGTTGCAAAAGCTGTTGTCCTCGAAGCTGGCGCTGGAGTCGGAGGTGCGGCGGCTGAAGCTGACGCTCAACGAGGAGCGCGCCGCCACGCACAACGGCCTGCACGCCAGCCACGACCACGACATTGAGAACGAACTGGAAACGTTACGTCGCTGCGTGTCGGAGGCTAAGgcgcgcgcggcgcgggcggaggcggaggcggcgcTGCAGGGCGCGGCGGTGGCGCGGCTCGAGGCGCAGGTGGTGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCACGAGCGCCGCCGCCTGCAGCGGGAGGCGCGGGATGCCCTGAACCGCGTGGAGGAGCTAGAGACGGAGAACAGCCACCTCACCAAGCGACTAGACAAACTCAAGAACGCCAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MGKRSKMATPNNSDEESGGAFTDGDFDDTDEETVVEKIGDKSQIPVNETVNTDVHKENGHLSRQHSNYYEQAKVNGHKNDESGQGEAAVDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGNVASLRATAADFKAHVLERQQREQEDHGDKAYDMYGSVASLRATAADFKGASTTLLCKLMCWSGSSANKRTMATRRTTCMAASPPCAPPPPTSRVRLLHYSVSSCAGAAAARTRGPCRQGVRHVRQRRLPARHRRRLQGCVYYITLLAHVLERQQREQEDHADKAYDMYGNVASLRATAADFKESVGRRGGSRLASLGSAPLHSPRRSSEDSADDAFSIKDLRHELKEMEEKFRKAMILNAQMDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLEREVCAARDAVRARDAAAAHAGYAFVDAALKPDAGANGEDSAPGFGSVPPLALVSHQSEQMLNEAGEGTLDVRLQKLLSSKLALESEVRRLKLTLNEERAATHNGLHASHDHDIENELETLRRCVSEAKARAARAEAEAALQGAAVARLEAQVVRLRARQDHQDEHEDQLKHERRRLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -