Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000105.1:642341-653153[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.1 6.3e+02 2.9 0.9 1 23 53 76 53 76 0.94

2 21 0.0022 0.44 12.8 2.9 1 23 83 106 83 106 0.97

3 21 4.6 9.3e+02 2.4 4.6 1 23 192 214 192 214 0.97

4 21 0.0012 0.25 13.6 0.7 2 23 220 241 219 241 0.97

5 21 6.4 1.3e+03 1.9 2.3 1 23 247 269 247 270 0.93

6 21 0.17 34 6.9 3.4 2 22 508 528 507 528 0.95

7 21 3.3 6.7e+02 2.8 1.0 1 23 627 649 627 649 0.82

8 21 0.51 1e+02 5.4 0.3 2 23 780 801 779 801 0.96

9 21 0.06 12 8.3 1.4 3 23 879 899 878 899 0.97

10 21 0.031 6.2 9.2 0.5 1 23 907 929 907 929 0.97

11 21 0.12 24 7.4 3.4 1 23 960 982 960 982 0.95

12 21 0.00023 0.047 15.9 4.0 1 23 990 1012 990 1012 0.99

13 21 0.92 1.9e+02 4.6 1.9 1 23 1091 1113 1091 1113 0.97

14 21 0.86 1.7e+02 4.7 0.7 1 19 1171 1189 1171 1193 0.92

15 21 2.3 4.7e+02 3.3 0.5 2 23 1200 1221 1199 1221 0.96

16 21 0.0085 1.7 11.0 0.7 1 23 1289 1311 1289 1311 0.94

17 21 0.014 2.8 10.3 1.1 1 23 1317 1339 1317 1339 0.96

18 21 0.0065 1.3 11.4 2.6 1 23 1429 1451 1429 1451 0.97

19 21 0.00016 0.033 16.4 1.4 1 23 1457 1479 1457 1479 0.99

20 21 3.3 6.6e+02 2.9 1.7 5 23 1573 1591 1569 1591 0.84

21 21 0.00083 0.17 14.2 3.9 1 23 1602 1624 1602 1624 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.1	6.3e+02	2.9	0.9	1	23	53	76	53	76	0.94
2	21	0.0022	0.44	12.8	2.9	1	23	83	106	83	106	0.97
3	21	4.6	9.3e+02	2.4	4.6	1	23	192	214	192	214	0.97
4	21	0.0012	0.25	13.6	0.7	2	23	220	241	219	241	0.97
5	21	6.4	1.3e+03	1.9	2.3	1	23	247	269	247	270	0.93
6	21	0.17	34	6.9	3.4	2	22	508	528	507	528	0.95
7	21	3.3	6.7e+02	2.8	1.0	1	23	627	649	627	649	0.82
8	21	0.51	1e+02	5.4	0.3	2	23	780	801	779	801	0.96
9	21	0.06	12	8.3	1.4	3	23	879	899	878	899	0.97
10	21	0.031	6.2	9.2	0.5	1	23	907	929	907	929	0.97
11	21	0.12	24	7.4	3.4	1	23	960	982	960	982	0.95
12	21	0.00023	0.047	15.9	4.0	1	23	990	1012	990	1012	0.99
13	21	0.92	1.9e+02	4.6	1.9	1	23	1091	1113	1091	1113	0.97
14	21	0.86	1.7e+02	4.7	0.7	1	19	1171	1189	1171	1193	0.92
15	21	2.3	4.7e+02	3.3	0.5	2	23	1200	1221	1199	1221	0.96
16	21	0.0085	1.7	11.0	0.7	1	23	1289	1311	1289	1311	0.94
17	21	0.014	2.8	10.3	1.1	1	23	1317	1339	1317	1339	0.96
18	21	0.0065	1.3	11.4	2.6	1	23	1429	1451	1429	1451	0.97
19	21	0.00016	0.033	16.4	1.4	1	23	1457	1479	1457	1479	0.99
20	21	3.3	6.6e+02	2.9	1.7	5	23	1573	1591	1569	1591	0.84
21	21	0.00083	0.17	14.2	3.9	1	23	1602	1624	1602	1624	0.98

Sequence Information

Coding Sequence: ATGCTTCAGCAGATGTTCTCGCCGAACTACAGCGTCGGTGAGGTCGTGTCTCTCGTACGCCCCTTCGAAGGACGATTGTGCGGTGACTCCTCGTCCGAGGCATCTTCGGACGCCGCCGAGGAGGTCGACTTACCGCAGTGCAAGATAAGGCGGAATTACAGCTGCACCAAGTGCAAGTTTTACACACAAAACCCGCGAGTTTATTTAGTGCATATACGTGACGTGCATTTTGAAAAGATTAAAATATATGACTGTCCACACTGTGTTTATGCCTCGAGGCATCAACAAAAACTTACTAGACATATAAAAATGGTTCACGGGACATCGACTCCCGCAACTACCGTCAAAATGGATACGGAACTACCCGCAACGGCTACGAACACTGCGGATCCGATAGAGCGCATTGAGGATATGCTCGAAGAAGTAGAGGAATGTGATGACATTGAGATAGACGTAGACGACTGCAACGAGGAGTCGTACGAGCGCTCCGCTGAAGCGAGCATGGAATGTGACAAAGCGGCGATGAACGATGACGCCGCTTTACTGGTGGCCATGAAGAATAAAGGAAAATACTTTTCTTGTAGCAAATGCAACTACGTAACTCACATAAAGGCGAGATTCACGAAACACGTAAAATATCACTCGATGCCGATGATCAAGTGCACAATATGCGATTTCCGTTCACCTTATAAATGGAATCTAGACCGCCACATGAAGAACCACGGTGGCAGTGGAAACTTCAAGTGCTTCATGTGCAACTTCACCGCGGATATCAAGCAGAGTCTGACGTTGCACGAGCTGAATCATCACACGCCGCCCGTGGGCCAATCGGTGACGAGTCGCCGCCGCAATCGGGTGGGCGCCAGCGACATGGCGGACGCTCTCATCCTGAAGGAGGAAGGGAGCGGCGACTCGCGGTCCTCGTTCTCGGCCTCGGACATGCTGAATGCAGAAAAAGATATTGTCAGCTGCCACAGCGACTCAAATGACGCCACATCAGACTCCGGCCTTAAGAAGGACACCGTGCAGTTGACACAAGATGGGCAAACTCAACTGTCTCCCAGCGCTTCAGCCGATGACGCCAAATCTCAGAAGCAAAATAGGAAAACTCCCAGACCGTTACCACCGCTCATACCATTGCATTCGTCAACACCCAATCAAAGTAAAACGCCAAGCGGAGAACCACCGGCGAAAAAATTCAAAGAAACTCCCAGCACAGAGACTGCAGAGTTGAAAAAAGGAAACAAATTCGAAAACTTGCCGATTGAAATTAGTGTTATACCTGTAAACAACATTCCTACAAGCAGCAAAGAGACCGCTAGTCGTAAGAAAAACAACTCATTTTTTGATAAACTCAAAGAAAGATTATTGACTGAAACTGGAAAAGAGGGATCTCTCATTTGTAAAAATTGCGGTTTCGAGAGTAAATGCCTATCAGAACATTCTGTTCATGAGAAAACCTGCACTGCTCAACTGAACCGAACATCAACAAACACGTTACTACCGAGTTTAAGTTCAACCCGTTGCCAGAATTGTAGACATAGATGCAAATCTAGTGCTGATTTATACGTTCACATGCAAACATGCAGAAAAAGTGAAAAACTTGAAGATGATCACGCAATGGAAGTAAAAAGTCAAGACAGTAACGAAGGCGAGACTTCAACGCAGGAGAAAGAAATCGAACCACACCCTATGGAGAATGTTGTATTTGTTTGGAACAATATTGGTCATAGCTCAAATAAGTATGACACTCCGCTCGATATCAATATCAATGATGACTCTACTCTTCCAGACATCAACAGAACGTACGATCCAGAAACTGCAGATGACAACGAAAGCATGAATTTATCACCTAGTCAGGCCGTGGGAAAGAAAGTTTTTAAATGTCCGCATTGTCCATTCTGGGCCTCGACTGCCTCAAGGTTCCACGTGCATATTGTTGGACATTTGAATAAAAAGCCGTTCGAATGCTCACTCTGCAAGTACAAATCTAACTGGCGCTGGGATATCACTAAACACATCAAACTAAAGTCGGCTAGGGACCCTGAACATAATGAAGCGAAGGTGCTCATGACGGACGAAACTGGACGTAGAAATTACAGTAAATACAACAAATTCCTAGCAATGTCCGTGTTGAATGATAACGGCGAAACTGTTTTTCGCTATATAGATTTAAACGCATCAGCTGACGCATCGATGGAGATTGACGACTCTTATGACGTAACAGATGGCATAAACCAGCCGATAGAAATGCAACCGCTCAATTTACAAATGCATGGCCACGAGCTAATGGATAGGAGGAGTCTAGATTTGAAGAAGCCCAAGAAAACTTTATGGAAGTGCAAGAAATGCAATTACAGAGATCCATCCAAAGAAGCATTACTAGAGCACGTGCGTGAACATGCGCGTGCAGAAGGCAACCCGGAGGAAATTAAAGTGGCGAAAAAGCCGGAAAATCTTCCGGATCCAGCTGACTTGGCATATCGCTGTGGTCACTGCAACCAACTGTCCAACTGGAAACATGTAATACAGAGACATTGTCGCTTGAAACATGATGGAGTAATAAAAGTTATAACTACGGTTAAGCCCAAGCCGGACATGACCATGGCACTGAATGATATTCAAGGTGAAAACTGTAACAAGTGCCCCTTCAAAACAACTGACAAAAAGTTGATGTTCGCGCATATCCAACAACACCAGCCATCGCCACAGTCTATTTTTAAATGCTTCTTCTGCCCTTACTTCGTGAAAGATGAGAATGAATTAATACAACACTTACTTCTGCATGGGGTGTCTGAACCAGAAGAGTACATTGCAAAAGCAATGGGACGTAAATCCCCACCTCCAGAATCAGGTCCACATACGTCGACAAAACGACATAAATGTACGGAATGTCCATATGAAACTAATAGCAAGTCTCAATACATGTATCATGAACAATTCCATCGACTACCTGCAGACACTCCCTACAAATGTCCTGAATGTAATTACAGTGTTTCAAAGAGACACCTACTTCATCAACATCTGAGAGTTCATGGAATAATGACAAAGAAGATAGAAACAGAAGCAGAATTAGAAGCAAAGTTAGATACTAGAATTGAATACTCGATAAATCTTGAAGAAATTCCATTTGTCTGGGTTTCAGCCAAAAATGAGTTCCACAAAATGTACAAATGTCGCTATTGTTCTTATGTGAACTCACAGAAATGTAAAATTCCAAACCACGAAAAAATTCACTGCATCGTTTTTGAAAGCAGTGACGTTACGGTCTACAAGTGTTTGGAATGCAAGTTTACATGTGATAGCGCCATAAGGTTAGCCGAGCATTCTAAAAGTCATGGAGAAATATACGGCCGTATTTACTGCCCTGTGGAAGTGGATATCCCAGATGAAGAACAAATCGCTAAACTGCGAAAAgtcattgaaattgaaaaacatAATGTTACAGAAGATGTACCTAAAGAGGAAAAATATACTATCGTAGGCGAAAACAATGAAACCAAAATACTATTCTTTTGCCAAGTGTGTCCAGCTAGATTTTTCGGAGCTGAAGAACTTAAAACTCATGATAAATTCCACGACTTGTCATTTCCAAATAAATGTAAACTTTGTAAATTTTCTGTACCGGAAGAATGTGACTTAGCTACTCATGTTGCTGTGCATACAGACGAATACCATACCAAAACCAAAATGCTGAAATTCATACATAACTCACATGGTGGGCATAAACAACCCAACCTAGACCTAGTACACTGTGAAAATACTTCAGAAATAATGTGGCTGGTTTCATCTCCAGGCAAAAACTATGATAATGAGCCTTCGGTTAATAAGCGACCCCATGACACGAAGCCAACTCCTAAGCAATATTTCTGCAAAGAGTGTCCAGCAAAATTCTTCAAAAGTTCTGCGCTAAATTATCATTTGGGATTGCACGGTGGAGAAGGTGatcataaatgtaaaaaatgcaGTTATGCTGTAAAAAACATAGGTAATTTAGCCAAACATGAGTTATTACACGAGAACCAAGGCAAGACCACAACATGTGATTACGAATCTGGTGAAGATATGGATTACAAAAATATCCCACTCTCGGGTACTGatttatttcaaagaaagaCTGAAGCTCAAAAGCGTGTACTTAACGATAAAGATAAGTTAGTGAAACCGAATGATCATTTTCCGCCAGTTTTGCAAGCTGATCCTCAGTTTGGGTATTTAATGCACGGAAATCCTGAATTTATTTATCCAACTTACTTGAAAAATGGACGTCAAAAAGAAAAACGATACAAATGCCACAAATGTCCATCTGCTTTTGAAAAAAGGGAACagtataaaatacatttatcaTTACATGGCTCTAAGCAACGATACAAATGTGAGCTTTGTGATTACTCTGTTAAGTACTACGCCAATTACGTCCAACATATGAGAAAGCATCAAATGAATGATGAAGCACAAGCAGAAAGGAAGAAGATTAGCAACGGACTCGTAGAGTCCGAACCAGTTGAAGACAAGCATGAAGACAGTGATAATATTAAACTTGCAATTAAAACAATGCCTAAGGGCATACCAAAAAGTGACTTCCAACAGTTTTCAATACGCGACCAACAAACGCTTAGACTTCTGCAGCGCCGGCGATCAATTAACGGCAATAAAGAGCAGATATCGCCGTCAGACGTATTACCGACAAAAGACAGAAAGTTACACATGTGCATACTGTGCCCTTACACGAATCAACGACAAGACGCTTTAAATAATCATTACAGAAGACATGATGAAACTGATGTTCTCAATTCAGGAAGTCACAAATGCTCTTACTGTGACTTGGTTGTTGTGCAATCACATTTCCTTCGGGATCATATGAAAACTCATTTTAACTACCAAAAGAATCTGACTCCTGAATGTTACGTGGCTAACGAGGACGTAGGTTTCACTATAACTAAAGAAGACGAAGACGGAACGTCGACGGATCTCAAATTAGATATACAAAACACGAGTCTTAAATGCAATGATGAAAAgttatttgtcaaaatacaaacaggAGAACTCATAGTTGAATAA
Protein Sequence: MLQQMFSPNYSVGEVVSLVRPFEGRLCGDSSSEASSDAAEEVDLPQCKIRRNYSCTKCKFYTQNPRVYLVHIRDVHFEKIKIYDCPHCVYASRHQQKLTRHIKMVHGTSTPATTVKMDTELPATATNTADPIERIEDMLEEVEECDDIEIDVDDCNEESYERSAEASMECDKAAMNDDAALLVAMKNKGKYFSCSKCNYVTHIKARFTKHVKYHSMPMIKCTICDFRSPYKWNLDRHMKNHGGSGNFKCFMCNFTADIKQSLTLHELNHHTPPVGQSVTSRRRNRVGASDMADALILKEEGSGDSRSSFSASDMLNAEKDIVSCHSDSNDATSDSGLKKDTVQLTQDGQTQLSPSASADDAKSQKQNRKTPRPLPPLIPLHSSTPNQSKTPSGEPPAKKFKETPSTETAELKKGNKFENLPIEISVIPVNNIPTSSKETASRKKNNSFFDKLKERLLTETGKEGSLICKNCGFESKCLSEHSVHEKTCTAQLNRTSTNTLLPSLSSTRCQNCRHRCKSSADLYVHMQTCRKSEKLEDDHAMEVKSQDSNEGETSTQEKEIEPHPMENVVFVWNNIGHSSNKYDTPLDININDDSTLPDINRTYDPETADDNESMNLSPSQAVGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMSVLNDNGETVFRYIDLNASADASMEIDDSYDVTDGINQPIEMQPLNLQMHGHELMDRRSLDLKKPKKTLWKCKKCNYRDPSKEALLEHVREHARAEGNPEEIKVAKKPENLPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDMTMALNDIQGENCNKCPFKTTDKKLMFAHIQQHQPSPQSIFKCFFCPYFVKDENELIQHLLLHGVSEPEEYIAKAMGRKSPPPESGPHTSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIMTKKIETEAELEAKLDTRIEYSINLEEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFESSDVTVYKCLECKFTCDSAIRLAEHSKSHGEIYGRIYCPVEVDIPDEEQIAKLRKVIEIEKHNVTEDVPKEEKYTIVGENNETKILFFCQVCPARFFGAEELKTHDKFHDLSFPNKCKLCKFSVPEECDLATHVAVHTDEYHTKTKMLKFIHNSHGGHKQPNLDLVHCENTSEIMWLVSSPGKNYDNEPSVNKRPHDTKPTPKQYFCKECPAKFFKSSALNYHLGLHGGEGDHKCKKCSYAVKNIGNLAKHELLHENQGKTTTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKISNGLVESEPVEDKHEDSDNIKLAIKTMPKGIPKSDFQQFSIRDQQTLRLLQRRRSINGNKEQISPSDVLPTKDRKLHMCILCPYTNQRQDALNNHYRRHDETDVLNSGSHKCSYCDLVVVQSHFLRDHMKTHFNYQKNLTPECYVANEDVGFTITKEDEDGTSTDLKLDIQNTSLKCNDEKLFVKIQTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00448640;
90% Identity: iTF_00285019;
80% Identity: -