Agen018712.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000229.1:125452-127386[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00012 0.024 16.8 0.1 2 23 22 43 21 43 0.95 2 22 0.89 1.8e+02 4.6 0.8 6 23 52 70 49 70 0.93 3 22 6.5e-06 0.0013 20.8 1.4 1 23 78 100 78 100 0.98 4 22 0.0025 0.5 12.7 2.1 1 23 106 129 106 129 0.95 5 22 1.3e-05 0.0027 19.8 5.2 1 23 135 157 135 157 0.98 6 22 0.002 0.41 13.0 6.3 1 23 163 186 163 186 0.96 7 22 1.9e-05 0.0039 19.3 4.3 1 23 192 214 192 214 0.99 8 22 0.011 2.1 10.7 6.1 1 23 220 243 220 243 0.96 9 22 0.00052 0.11 14.8 3.8 1 23 249 271 249 271 0.99 10 22 6.8e-06 0.0014 20.7 5.2 1 23 277 300 277 300 0.97 11 22 0.00033 0.067 15.4 1.3 1 23 306 328 306 328 0.98 12 22 1.3e-05 0.0027 19.8 2.6 1 23 334 357 334 357 0.97 13 22 8.1e-06 0.0016 20.5 1.1 1 23 363 385 363 385 0.98 14 22 5.2e-05 0.011 18.0 3.8 1 23 391 414 391 414 0.97 15 22 1.5e-05 0.003 19.7 1.6 1 23 420 442 420 442 0.98 16 22 1.5e-05 0.003 19.7 4.1 1 23 448 471 448 471 0.97 17 22 3.8e-05 0.0076 18.4 0.9 1 23 477 499 477 499 0.98 18 22 4e-06 0.00081 21.5 1.1 1 23 505 528 505 528 0.95 19 22 1.3e-05 0.0027 19.8 5.2 1 23 534 556 534 556 0.98 20 22 0.022 4.5 9.7 4.5 1 23 562 584 562 584 0.98 21 22 0.017 3.4 10.1 7.4 1 23 590 613 590 613 0.96 22 22 0.0019 0.38 13.1 1.1 1 23 619 642 619 642 0.97
Sequence Information
- Coding Sequence
- ATGGGTAATATTTGTGTTTTTAGGAATGGCAGCATCCAAAACAATCTATTTGCAAAACGGTTGAAATGTAGTGAATGTGGGCTGAGATTTGTACAAAAAAGCACATTGGAGGGCCATGCGGCTGTTCACAAACCTTTCCCTCACATCTGTTTTTGTGGCATTGGCTATTACCTCAAATCAGATCTGCATAAACACAAAAACTTAGTGCACAGCCACCAAAATGAGATACTGTTTCCATGTTCGTTTTGTGACAAGACTTTCAAAACACGCTGGGAGATGCGGATACACGAGCGCACACATACTGGAGAAAGACTGTACGATTGCGAGTTGTGTGATAAAAGGTTTATAACATCATCTCGTTTAAAATGTCATTTAGATACTATCCACTCAGATAAGAGACCGTTTTCATGTTCGTTTTGTGACAAGGCTTTTAAAAACCGCAATCATATGCAGAGACACGAGCGCACGCATACTGGAGAAAGACCATACCATTGCGAGTTGTGTGATAAAAGGTTTATAACATCATCTCATTTAAAATGTCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCAATGTTCGTTTTGTGACAAGGCTTTCAAGCACCGCAATTCGATGAAGGCACACGAGCGCACACATACTGGAGTAAGACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTACAGCATCATCTCATTTAAAATGTCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCAATGTTCGTTTTGTGACAAGGCTTCCAAGCACCGCAATTCTATGAAGGCACACGAGCGCACACATACTGGAGTAAGACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTACAAGATCATCTCATTTAAAATATCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTTGTTTTGTGACAAGGCTTTCAAGTACCGCAATGCTATGCAGTATCACGAACGCACACATACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATaacatcatcttatttaaaactTCATTTAGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGATTTGTGACAAGGATTTCAAAACACGCCTTAATATGCAGCAACACGAGCGCACACATACTGGAGGAAGACCGTACCATTGCAAGTTGTGTGATAAAAGGTTTATACTATCAGCTCATTTAAAACGTCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTCAAGGACCGCAATACTATGCAGCAACACGAGCGCACACATACTGGAGAAAAACCTTACCATTGCGAGTTGTGTGATAAAAGGTTTATAACATCATCTCATTTAAAATATCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTCAAGTACCGCAATGCTATGCAGATACACGAGCGCACACATACTGGAGAAAAACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTACTCAATTAGGTAATTTAAAACAACATTTGGATGTTATCCACGCAGATAAGAAACCGTTTTCATGTTCGTTTTGTGACAAGGCTTTTAAAAACCGCAATCATATGCAGAGACACGAGCGCACGCACACTGGCGTCAAGCCCTACTCCTGCATGCTGTGCGGGATGAAGTTTAGCACTCGTAACTGCCAATTAAAGCACGAAAGACGCCACTTGGGAAAAAGAGAATTCCAGTGTGTATTATGCCACAAAAAGTTTCACACCAAACAAGCGCTACATAAACATAAGATCTCGATTCACGACAAAGATAAAAGCTATGAGTGCGACCACTGTTCTAAGACTTATTCATTAAAGGAGGTTTTGGTAGGGCACATTAATCGTTAtcattcacaataa
- Protein Sequence
- MGNICVFRNGSIQNNLFAKRLKCSECGLRFVQKSTLEGHAAVHKPFPHICFCGIGYYLKSDLHKHKNLVHSHQNEILFPCSFCDKTFKTRWEMRIHERTHTGERLYDCELCDKRFITSSRLKCHLDTIHSDKRPFSCSFCDKAFKNRNHMQRHERTHTGERPYHCELCDKRFITSSHLKCHLDTIHSDKRPFQCSFCDKAFKHRNSMKAHERTHTGVRPYHCELCDKRFTASSHLKCHLDTIHSDKRPFQCSFCDKASKHRNSMKAHERTHTGVRPYHCELCDKRFTRSSHLKYHLDTIHSDKRPFPCLFCDKAFKYRNAMQYHERTHTGERPYHCELCDKRFITSSYLKLHLDTTHSDKRPFPCSICDKDFKTRLNMQQHERTHTGGRPYHCKLCDKRFILSAHLKRHLDTIHSDKRPFPCSFCDKAFKDRNTMQQHERTHTGEKPYHCELCDKRFITSSHLKYHLDTIHSDKRPFPCSFCDKAFKYRNAMQIHERTHTGEKPYHCELCDKRFTQLGNLKQHLDVIHADKKPFSCSFCDKAFKNRNHMQRHERTHTGVKPYSCMLCGMKFSTRNCQLKHERRHLGKREFQCVLCHKKFHTKQALHKHKISIHDKDKSYECDHCSKTYSLKEVLVGHINRYHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035008;
- 90% Identity
- -
- 80% Identity
- -