Agen018720.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriphila geniculea
Gene Symbol
-
Assembly
GCA_943789515.1
Location
CALSUL010000229.1:193285-195147[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.8e-06 0.00097 21.2 1.6 1 23 14 37 14 37 0.97
2 21 0.0043 0.87 11.9 2.2 1 23 43 65 43 65 0.99
3 21 4e-05 0.0081 18.3 1.2 1 23 71 94 71 94 0.97
4 21 2.1e-05 0.0042 19.2 3.0 1 23 100 122 100 122 0.97
5 21 1.4e-05 0.0029 19.7 4.1 1 23 128 151 128 151 0.97
6 21 2.2e-05 0.0045 19.1 3.2 1 23 157 179 157 179 0.98
7 21 6.7e-05 0.014 17.6 1.8 1 23 185 208 185 208 0.97
8 21 2.9e-05 0.0059 18.8 4.4 1 23 214 236 214 236 0.99
9 21 4.8e-06 0.00097 21.2 1.6 1 23 242 265 242 265 0.97
10 21 2.2e-05 0.0045 19.1 1.6 1 23 271 293 271 293 0.99
11 21 0.00022 0.044 16.0 1.3 1 23 299 322 299 322 0.97
12 21 2.9e-05 0.0059 18.8 4.4 1 23 328 350 328 350 0.99
13 21 3.9e-06 0.00078 21.5 1.6 1 23 356 379 356 379 0.96
14 21 2.1e-05 0.0042 19.2 2.8 1 23 385 407 385 407 0.98
15 21 3.9e-05 0.0079 18.4 2.8 1 23 413 436 413 436 0.97
16 21 1.3e-05 0.0027 19.8 0.6 1 23 442 464 442 464 0.98
17 21 0.00015 0.03 16.5 3.1 1 23 470 493 470 493 0.97
18 21 4.7e-06 0.00095 21.2 4.3 1 23 499 521 499 521 0.98
19 21 0.0044 0.89 11.9 4.4 1 23 527 549 527 549 0.98
20 21 0.16 33 7.0 6.3 1 23 555 578 555 578 0.95
21 21 0.00096 0.19 14.0 5.1 1 23 584 607 584 607 0.98

Sequence Information

Coding Sequence
ATGCGGATACACGAGCGCACACATACTGGAGTAAGACCATACCATTGCGAGTTGTGTGATAAAAGATTTATAACATCATCTTCGTTAAAACTTCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCAATGTTCGTTTTGTGACAAGGCTTCCAAGTTCCGCAATGCTATGCAGTATCACGAACGCACACATACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAACTATTTATAACATCATCTTCTTTAAAACTTCATTTAGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTgtgacaaagcttttaaaaaccGCAATCATATGCAGAGACACGAGCGCGCACATACTGGAGAAAGACCGTATCATTGCGAGTTGTGTGATAAAAGGTTTATAACATCATCTCATTTAAAATATCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTCAAGCACCGCAATTCTATGAAGGCACACGAGCGCACACATACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTACAACGGCATCTTCTATAAAATATCATTTGGATACTATCCACTCAGATAAGAGAGCATTTACATGTTCGTTTTGTGACAAGGCTTTCAAGCACCGCAATTCTATGAAGGCACACGAGCGCACACATACTGGAGTAAGACCATACCATTGCGAGTTGTGTGATAAAAGATTTATAACATCATCTTCGTTAAAACTTCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCAATGTTCGTTTTGTGACAAGGCTTTCAAGTACCGCAATGCTATGCAGATACACGAGCGCACACATACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATAATATCATCTCTTTTAAAATATCATTTGGATACTATCCACACAGATAAGAGATCATTTACATGTTCGTTTTGTGACAAGGCTTTCAAGCACCGCAATTCTATGAAGGCACACGAGCGCACACATACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTACTCAATCAGGTAATTTAAAACTTCATGTGGATACTCTCCACTCAAATGAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGATTTCAAAACACGCTTTAATATGCAGCAACACGAGCGCACACATACTGGAGGAAGACCTTACCATTGCGAGTTGTGTGATAAAAGGTTTATACTATCAGCTCATTTAAAACGTCATTTGGATACTATCCACTCAGATAAGAGACCGTTCCCATGTTCGTTTTGTGACAAGGCTTTCAAGGACCGCAATGCTATGCAGATACACGAGCGCACACATACTGGAGAAAAACCGTACCATTGCGAGTTGTGTGATAAAAGGTTTATAGCATCATCTCATTTAAAATATCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTGacaaagtttttaaaaaccgcAATCATATGCAGAGACACGAGCGCACGCACACTGGCGTCAAGCCCTACTCCTGCATGCTGTGCGGGATGAAGTTTAGCACTCGTAGCTGCCAATTAAAGCACGAAAGACGCCACATGGGAAAAAGAGAATTCCAGTGTGTATTATGCCACAAAAAGTTTCACGCCAAACAAGCACTACATAAACATAAGATCTCGGTTCACGACAAAGATAAAAGCTATGAGTGCGACCACTGTTCTAAGACTTTTTCATTAAAGAAGTGTTTGGTAGGGCACATTAAGCGTAATCATTCACAATTCTTTATGACCAATTTCAAAGTAAATTTGAAATGA
Protein Sequence
MRIHERTHTGVRPYHCELCDKRFITSSSLKLHLDTIHSDKRPFQCSFCDKASKFRNAMQYHERTHTGERPYHCELCDKLFITSSSLKLHLDTIHSDKRPFPCSFCDKAFKNRNHMQRHERAHTGERPYHCELCDKRFITSSHLKYHLDTIHSDKRPFPCSFCDKAFKHRNSMKAHERTHTGERPYHCELCDKRFTTASSIKYHLDTIHSDKRAFTCSFCDKAFKHRNSMKAHERTHTGVRPYHCELCDKRFITSSSLKLHLDTIHSDKRPFQCSFCDKAFKYRNAMQIHERTHTGERPYHCELCDKRFIISSLLKYHLDTIHTDKRSFTCSFCDKAFKHRNSMKAHERTHTGERPYHCELCDKRFTQSGNLKLHVDTLHSNERPFPCSFCDKDFKTRFNMQQHERTHTGGRPYHCELCDKRFILSAHLKRHLDTIHSDKRPFPCSFCDKAFKDRNAMQIHERTHTGEKPYHCELCDKRFIASSHLKYHLDTIHSDKRPFPCSFCDKVFKNRNHMQRHERTHTGVKPYSCMLCGMKFSTRSCQLKHERRHMGKREFQCVLCHKKFHAKQALHKHKISVHDKDKSYECDHCSKTFSLKKCLVGHIKRNHSQFFMTNFKVNLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00035009;
90% Identity
-
80% Identity
-