Agen013876.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000164.1:708597-719173[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-56 1.2e-51 177.7 6.7 61 297 170 402 144 405 0.82 2 2 0.51 3.3e+04 -4.4 9.3 119 170 416 467 409 479 0.60
Sequence Information
- Coding Sequence
- ATGCCGACAAGGCGTACGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGGTGCGTCTACTACATTACTCTGTTAGCTCTCTGTGCTGGAGCGACAACAACGCGAGCAAGAGGACCATGCCGATAAGGCGTACGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACAAGGGTGCGTCTACTACATTACTCTGTTAGCTCTATGTGCTGGAGCGACAACAACGCGAGCAAGAAGACCATGCCGACAAGGCGTACGACATGTACGGCAACGTCGCCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGGTGTGTCTACTACATAACTCTGTTAGCTCCATGTGCTGGAGCGGCAACGGCGCAAGCAGGAGGACCGTGCCGACAAGGCGTACGACATGTACGGCAACGTTGCCGCGCGCCACCGCCGCCGACTCCAAGGAATCGGTGGGCCGGCGCGGCGGGTCGCGGCTCGCGAGCCTGGGCTCGGGGCCGCTGCACTCCCCGCGGCGCAGCTCCGAGGACTCCGCCGATGACGCCTTCAGTATTAAGGATCTCAGGCATGAGCTGAAAGAGATGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGATGGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAATACGCGCAGCTACAGCGCGAACACAAAGAGAAGTGTTCAGCTCACGAGCGGTTGAAGCGCGATCACTTGGCGCTGGAGCGCGAGGTGTGCGCGGCGCGCGACGCCGTGCGCGCGCGGGACGCGGCCGCCGCGCACGCCGGCTACGCCTTCGTGGACGCCGCGCTCAAGCCCGACGGCAACGCCAACGGGGAAGACAGCGCGCCTGGGTTCGGGTCCGTGCCGCCGCTGGCGCTAGTGTCGCATCAATCCGAGCAGATGCTCAACGAGGCCGGCGAAGGAACGCTGGACGTCCGGTTGCAAAAGCTGCTGGCCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGGCGGCTGAAGCTGACGCTCAACGAGGAGCGCGCCGCCACGCACAACGGGCTGCACGCCAGGCACGACCACGACATTGAGAACGAACTGGAAACGTTGCGGCGCTGCGTGTCGGAGGCGAAGGGTCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGGCGCGGCCGTGGCGCGGCTGGAGGCGCAGGTGGCGCGCCTGCGCGCGCGCCAGGACCACCACGACGAGCACGAGGACCAGCTCAAGCACGAGCGCCGCCGCCTGCAGCGAGAGGCGCGGGAAGCACTGAACCGCGTGGAGGAATTAGAGACGGAGAACAGCCACCTTACCAAGCGACTAGACAAACTCAAGAACGCCAAGTCGGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MPTRRTTCTATSPPCAPPPPTSRVRLLHYSVSSLCWSDNNASKRTMPIRRTTCTATSPPCAPPPPTRVRLLHYSVSSMCWSDNNASKKTMPTRRTTCTATSPPCAPPPPTSRVCLLHNSVSSMCWSGNGASRRTVPTRRTTCTATLPRATAADSKESVGRRGGSRLASLGSGPLHSPRRSSEDSADDAFSIKDLRHELKEMEEKFRKAMILNAQMDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKRDHLALEREVCAARDAVRARDAAAAHAGYAFVDAALKPDGNANGEDSAPGFGSVPPLALVSHQSEQMLNEAGEGTLDVRLQKLLASKQALESEVRRLKLTLNEERAATHNGLHARHDHDIENELETLRRCVSEAKGRAARAEAEAALQGAAVARLEAQVARLRARQDHHDEHEDQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -