Basic Information

Insect: Agriopis marginaria
Gene Symbol: ush
Assembly: GCA_932301435.1
Location: CAKOAR010000032.1:329674-333628[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.023 1.3 9.9 0.4 1 20 135 154 135 156 0.94

2 9 0.0012 0.069 14.0 0.7 1 23 193 215 193 215 0.97

3 9 0.098 5.8 7.9 0.6 3 20 247 264 246 266 0.92

4 9 0.038 2.2 9.2 1.2 2 21 515 534 515 535 0.95

5 9 0.0063 0.38 11.7 0.2 3 20 563 580 561 582 0.90

6 9 5.1 3e+02 2.5 0.0 2 23 611 632 610 632 0.93

7 9 0.01 0.62 11.0 1.3 1 23 638 660 638 660 0.99

8 9 0.21 12 6.9 1.0 1 23 699 722 699 722 0.96

9 9 0.17 10 7.2 0.9 2 20 765 783 765 785 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.023	1.3	9.9	0.4	1	20	135	154	135	156	0.94
2	9	0.0012	0.069	14.0	0.7	1	23	193	215	193	215	0.97
3	9	0.098	5.8	7.9	0.6	3	20	247	264	246	266	0.92
4	9	0.038	2.2	9.2	1.2	2	21	515	534	515	535	0.95
5	9	0.0063	0.38	11.7	0.2	3	20	563	580	561	582	0.90
6	9	5.1	3e+02	2.5	0.0	2	23	611	632	610	632	0.93
7	9	0.01	0.62	11.0	1.3	1	23	638	660	638	660	0.99
8	9	0.21	12	6.9	1.0	1	23	699	722	699	722	0.96
9	9	0.17	10	7.2	0.9	2	20	765	783	765	785	0.92

Sequence Information

Coding Sequence: ATGATAGCACATTTCGACTGGCGTCGCGTCGTCGTGAATACCTCGGGTACAGCCAAAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGACGGGCTCTCGGGCCGCGTCCTCGGGCGGCGGCTCGCCCGCGTCCGGCGGCGTGTCGCCCGCGCCCGCGCCCTCGCCGCCGCGCCTGCGGCTCAACCCCTCGCTGGCGACCGACCCTGCGCTGGCGCCCTCAGCCGTGCGGCTCAAGCGTGAGCCGCCGTCGCCGAGCCCGCCGGCGCCGGCCGCGGCCGCACCACCCGCGCCCGCGCCCCCCACCCGCGACTTTCTCGCCGCCGCCGCGGCCGCGTTCCCCGGGCTGTTCCCGGCCGCCGCGCCCGGCTACATGTGCAAGCCGTGCAACATCCGCTACTCGTCGCTGTCGACGCTGCAGGCGCACCAGGAGCACTACTGCTCCAACCGGCTGCCCAAGCCGGCGGCGACCGACTCGCCGAGCGACGCGCTCGCCGACGAGTCCAGCGGCGACTCTAAGACGCCGCGCCCGCCCTCCAAGCAGTATGCGTGCATGCAGTGCTCCTACAGCGCCGACAAGAAAGTGAGCCTCAACCGGCACATGCGCATGCACTCGTCGTCACCCGTGAGCAGCGGCGCGCCCCCCGCGCCCGCGCTGCCCGCCAACGGCGACACGGCGGACGGGCCGCCCGCGCAGGACCGCTACTGTGCCGACTGCGACATCCGCTTCAGTTCGATCAAGACGTACCGTGCGCACAAGACGCACTACTGCAACACGCGGCAAGTGGTGAAGGGTGCGGGCGGCGGCGGCACGGCCCGCAGCGGCGGCTCCGTGACGTCGGGCTCGGCGCCGCCCTCCCCCGGGCCGACGCCGCCCGCGGCTGCGCGCGCCGAGTACGCGCTGGCGCTGCCCACCAACCCCATCCTGATCCTGCCAGTTGGGCTGCTGCGGAACGCTAGCACGCTACCTGGCGCCACGCTGCCCGACCCGGACGCGCCTTGCTTCCTTCTGCCCAACGGCACCTTCCAGCCGTTCTCGCAAGCGCTCTCCGGCGCGGAGGGCGGCGAGCGGGGCACCGGCGGCCTGGTGCTGCGGTCCGCGAACCGCGCTCGGTCGGCAGCGCGAGAGAGCGCCGGCGCCGTGCCGCTCGACCTCAGCTTCCGGCGCTCGCCCGAGCCCCGAGCCGCCGACGACCCCGAGAAGGAGAACCGGCTGCGGTCGGCGACGCCGGAGCAGATCGTGTGCGCGCCCTCGCTGCCGCCGTCACCGGGCACACCCTCCCCCTCCCCGCGCCGCTCCGCCTCCCCGAGCGGCGAGCGCTCGCCCAAGCGGCGGCGGCGGTCGCACGGCGCAGCCGTCACGCCGAAGCCGCCCTCGCCACCCGAAGACAAGTTCCGGCCGGAGGAGAAGTTCTCACCGGCGGGCGCGGTGCCGCACGCGCTCGCGGTGCGGCTGGCGGGCGAGCTGCCGCCGGCGCCGCCCTCCGTGGTCGTGAAGCAAGGCGTGGCCAAGTGCAACGAGTGCAACATAGTGTTCTGCCTGTACGACAGCTACCGCGTGCACAAGCGACTGTACTGCGCGGCGGGCGGCGGCGAGGAGCGCGCAAGTCCCGCGCCGGAGCCCGGCCCGCCGCCGCAGTACCGGCAGCTCATCTGCCTCGCGTGCGGGATACATTTCAGCTCGCTGGACAACCTGCAGACGCACCAGTCCTACTACTGCACGAAGCGCGAGACGCGGTCGCCTCGCGGCGGGGCGGTGGAGACGCGGAGCGGGGGCGGTGCGACAGAGGGCGGCTGGAAGTGCCCGTGCTGTGAGGTTGTGTCACCGACAGCGGCGGCAGCGCAGCGGCACATGGAGGCGCACGCCGGGGTGAAGGCGTTCCGCTGCACCATCTGCCGGTACCGCGGGAACACGCTGCGCGGCATGCGCACACACATACGTATGCACTTCAACAACAAGAAGCCAGCTGACTTACAGGAGGAGACCTACATAGAGTGCGTGCTAGAGAACGAGAACCGGGAGAGCACGTCTCCCAGCCCCGCGGCCACCGGGGAGAGAGTCCACCGCTGCAGCAGCTGTGCTTACACCTCCACATACCGCGGCAACGTGATCCGACACGCGAGGCTGGTCCACGCGACTGAGGAACCAGAGGAAGACCACTCACCGACATTACCTGCCCTCCCAACACTCCCAATCACAGTAACCCCTACGATAGACATCAAAAAGGAACCGGAGCCAGAAACTGAAGAAACTCCCAACTATTGCAAATCTTGTGACATATCATTTAAGTACGTGAACACGTTTAAGGCTCACAAGCAGTTCTACTGCACGGCCAATAATCAGGAGTCGGTGGGGAATAATAACGTCCCAGCTCCGGCTAGGGTCAATGATACGCCTGTGCTGTAA
Protein Sequence: MIAHFDWRRVVVNTSGTAKGEDEEWGNESEAMPGEPRTPSSTGSRAASSGGGSPASGGVSPAPAPSPPRLRLNPSLATDPALAPSAVRLKREPPSPSPPAPAAAAPPAPAPPTRDFLAAAAAAFPGLFPAAAPGYMCKPCNIRYSSLSTLQAHQEHYCSNRLPKPAATDSPSDALADESSGDSKTPRPPSKQYACMQCSYSADKKVSLNRHMRMHSSSPVSSGAPPAPALPANGDTADGPPAQDRYCADCDIRFSSIKTYRAHKTHYCNTRQVVKGAGGGGTARSGGSVTSGSAPPSPGPTPPAAARAEYALALPTNPILILPVGLLRNASTLPGATLPDPDAPCFLLPNGTFQPFSQALSGAEGGERGTGGLVLRSANRARSAARESAGAVPLDLSFRRSPEPRAADDPEKENRLRSATPEQIVCAPSLPPSPGTPSPSPRRSASPSGERSPKRRRRSHGAAVTPKPPSPPEDKFRPEEKFSPAGAVPHALAVRLAGELPPAPPSVVVKQGVAKCNECNIVFCLYDSYRVHKRLYCAAGGGEERASPAPEPGPPPQYRQLICLACGIHFSSLDNLQTHQSYYCTKRETRSPRGGAVETRSGGGATEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEETYIECVLENENRESTSPSPAATGERVHRCSSCAYTSTYRGNVIRHARLVHATEEPEEDHSPTLPALPTLPITVTPTIDIKKEPEPETEETPNYCKSCDISFKYVNTFKAHKQFYCTANNQESVGNNNVPAPARVNDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143470;
90% Identity: iTF_00033394;
80% Identity: -