Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: ush
Assembly: GCA_949125355.1
Location: OX421263.1:2174562-2179226[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.023 1.7 9.9 0.4 1 20 121 140 121 142 0.94

2 9 0.0012 0.084 14.0 0.7 1 23 179 201 179 201 0.97

3 9 0.097 7.1 7.9 0.6 3 20 233 250 232 252 0.92

4 9 0.037 2.7 9.3 1.2 2 21 501 520 501 521 0.95

5 9 0.0063 0.46 11.7 0.2 3 20 549 566 547 568 0.90

6 9 5.1 3.7e+02 2.5 0.0 2 23 599 620 598 620 0.93

7 9 0.01 0.76 11.0 1.3 1 23 626 648 626 648 0.99

8 9 0.21 15 6.9 1.0 1 23 687 710 687 710 0.96

9 9 0.17 12 7.2 0.9 2 20 753 771 753 773 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.023	1.7	9.9	0.4	1	20	121	140	121	142	0.94
2	9	0.0012	0.084	14.0	0.7	1	23	179	201	179	201	0.97
3	9	0.097	7.1	7.9	0.6	3	20	233	250	232	252	0.92
4	9	0.037	2.7	9.3	1.2	2	21	501	520	501	521	0.95
5	9	0.0063	0.46	11.7	0.2	3	20	549	566	547	568	0.90
6	9	5.1	3.7e+02	2.5	0.0	2	23	599	620	598	620	0.93
7	9	0.01	0.76	11.0	1.3	1	23	626	648	626	648	0.99
8	9	0.21	15	6.9	1.0	1	23	687	710	687	710	0.96
9	9	0.17	12	7.2	0.9	2	20	753	771	753	773	0.92

Sequence Information

Coding Sequence: ATGAAAATTCCTAAAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGACGGGCTCACGGGGCGCGTCCTCGGGCGGCGGCTCACCCGCGTCCGGCGGCGTCTCGCCCGCGCCTGCTGTCTCGCCACCGCGCCTGCGGCTCAACCCCTCGCTGGCGACCGACCCCGCGCTTGCGCCCCAAGCCGTACGGCTCAAGCGTGAGCCGCCCTCGCCGAGTCCGCCGGCGCCTGCCGCACCCGCAccgcctgcgcctgcgcctcCCACCCGCGACTTCCTCGCCGCCGCCGCGGCCGCGTTTCCCGGCCTGTTCCCGGCGGCCGCGCCCGGCTACATGTGCAAGCCGTGCAACATCCGCTACTCGTCGCTGTCGACACTGCAGGCGCACCAGGAGCACTACTGCTCAAACCGGCTGCCTAAGCCGACGACAACTGACTCGCCGAGTGACGCGCTCGCCGACGAGTCCAGTGGTGACTCGAAGACGCCGCGCCCGCCCTCCAAGCAGTATGCGTGCATGCAGTGCTCCTACAGCGCGGACAAGAAAGTGAGCCTCAACCGGCACATGCGTATGCACTCGTCATCACCCGTGAGCAGCGGCGCTCCCCCCGCGCCCACGCTGCCTGCCAACGGCGACACGGCGGAAGGACCGCCTGTACAGGACCGCTACTGTGCCGACTGCGACATCCGCTTCAGCTCGATCAAGACGTACCGCGCGCACAAGACGCACTACTGCAACACGCGGCAGGTGGTGAAGGGCGCGGGTGGCGGCGGCACGACGCGCAGCGGCGGCTCTGTGACGTCGGGCTCGGCGCCGCCCTCTCCCGGACCGACGCCGCCCGCAGCCGCGCGCGCCGAGTACGCGCTGGCGCTGCCCACCAACCCCATCCTGATCCTGCCAGTGGGGCTGCTGCGGAACGCCAGCACGTTACCTGGTGCCACGCTGCCCGACCCGGACGCGCCTTGCTTCCTGCTACCCAATGGCACCTTCCAGCCGTTCTCGCAGGCGCTCTCCGGCGCGGAGGGCGGCGAGCGGTGTGCCGGCGGCTTGGTGCTGCGGTCGGCGAACCGCACCCGGTCGACGGCGAGAGACAGCGCCGGCGCCGTGCCGCTCGATCTTAGTTTCCGGCGCTCACCCGAGCTACGAGCCGCCGATGACCCTGAGAAGGAGAACCGGCTGCGGTCGGCGACGCCCGAGCAGATCGTGTGCGCACCCTCGCTGCCGCCGTCGCCAGGCACACCCTCCCCTACCCCACGCCGCTCCGCCTCCCCGAGCGGTGAGCGTTCACCCAAGCGGCGGCGACGGTCGCATGGCGCCGCTGTCACGCCGAAGCCACCCTCGCCTCCCGAAGACAAATTCCGGCCTGAGGAGAAGTTCACGCCGGCGGCCACGGTGCCGCACGCGCTTGCGGTGCGGCTGGCGGGCGAGTTGCCGCCGGCACCGCCCTCCGTGGTCGTGAAGCAGGGCGTGGCCAAGTGCAACGAGTGCAACATAGTGTTCTGCCTGTATGATAGCTACCGCGTGCACAAGCGGCTGTACtgcgcggcgggcggcggcgagGAGCGCGCGAGTCCCGCGCCGGAGCCCGGCCCGCCGCCGCAGTACCGTCAGCTCATCTGCCTCGCGTGCGGGATACACTTCAGCTCGCTAGACAACCTGCAGACGCACCAGTCCTACTACTGCACGAAGCGCGAGACGCGGTCGCCGCGCGCCGGCGCGGCGGAGGCGCGGGGCGGGGGCGGCGGCGGTGTGGCTGAGGGCGGCTGGAAGTGTCCGTGCTGCGAGGTGGTGTCGCCGACAGCGGCAGCGGCGCAGCGCCACATGGAGGCGCACGCCGGGGTGAAAGCGTTCCGCTGCACCATCTGCCGGTACCGCGGGAACACGCTGCGCGGCATGCGCACCCACATACGAATGCACTTCAACAACAAGAAGCCTGCCGACTTACAGGAGGAGACCTACATAGAGTGCGTGCTAGAGAACGAAAACCGGGAGAGCACGTCTCCCAGCCCCGCGGCCACAGGGGAGAGAGTCCATCGCTGCAGCAGCTGTGCGTACACCTCCACATACCGCGGCAACGTGATCCGACACGCGAGGTTGGTCCACGCGACTGAGGAACCAGAGGAAGACCACTCACCGACATTACCTACCCTCCCAACACTCCCTATCACAGTAACCCCTACGatagacataaaaaaagaaccggAGCCGGAAACAGAAGAAACTCCCAACTACTGCAAATCCTGTGACATATCATTTAAGTATGTGAACACTTTTAAAGCTCACAAGCAGTTCTACTGTACAGCCAATAATCAGGAGTCGGTGGGGAATAATAACGTCCCGGCTCCGGCTAGGGTCAATGATACGCCTGTGCTGTAA
Protein Sequence: MKIPKGEDEEWGNESEAMPGEPRTPSSTGSRGASSGGGSPASGGVSPAPAVSPPRLRLNPSLATDPALAPQAVRLKREPPSPSPPAPAAPAPPAPAPPTRDFLAAAAAAFPGLFPAAAPGYMCKPCNIRYSSLSTLQAHQEHYCSNRLPKPTTTDSPSDALADESSGDSKTPRPPSKQYACMQCSYSADKKVSLNRHMRMHSSSPVSSGAPPAPTLPANGDTAEGPPVQDRYCADCDIRFSSIKTYRAHKTHYCNTRQVVKGAGGGGTTRSGGSVTSGSAPPSPGPTPPAAARAEYALALPTNPILILPVGLLRNASTLPGATLPDPDAPCFLLPNGTFQPFSQALSGAEGGERCAGGLVLRSANRTRSTARDSAGAVPLDLSFRRSPELRAADDPEKENRLRSATPEQIVCAPSLPPSPGTPSPTPRRSASPSGERSPKRRRRSHGAAVTPKPPSPPEDKFRPEEKFTPAATVPHALAVRLAGELPPAPPSVVVKQGVAKCNECNIVFCLYDSYRVHKRLYCAAGGGEERASPAPEPGPPPQYRQLICLACGIHFSSLDNLQTHQSYYCTKRETRSPRAGAAEARGGGGGGVAEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEETYIECVLENENRESTSPSPAATGERVHRCSSCAYTSTYRGNVIRHARLVHATEEPEEDHSPTLPTLPTLPITVTPTIDIKKEPEPETEETPNYCKSCDISFKYVNTFKAHKQFYCTANNQESVGNNNVPAPARVNDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143470;
90% Identity: iTF_00034293; iTF_00143470; iTF_00044957;
80% Identity: -