Amal001946.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:18396761-18400958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0099 0.96 11.0 2.9 1 23 412 434 412 435 0.95 2 11 0.013 1.3 10.7 2.7 1 23 441 463 441 463 0.97 3 11 0.0026 0.25 12.9 3.3 1 23 518 541 518 541 0.94 4 11 6.6e-06 0.00065 21.0 0.8 2 23 558 579 558 579 0.97 5 11 6.6e-05 0.0064 17.9 5.1 2 23 1072 1094 1072 1094 0.96 6 11 0.00024 0.023 16.1 5.2 1 23 1100 1122 1100 1122 0.99 7 11 0.77 75 5.1 0.5 2 23 1127 1149 1126 1149 0.85 8 11 0.00094 0.092 14.2 0.1 2 23 1156 1177 1155 1177 0.97 9 11 0.16 15 7.3 3.6 1 23 1183 1205 1183 1205 0.95 10 11 0.00044 0.043 15.3 0.7 1 23 1209 1231 1209 1231 0.98 11 11 0.05 4.9 8.8 5.7 1 22 1241 1262 1241 1265 0.92
Sequence Information
- Coding Sequence
- ATGTATTTTATGTCCGATTTTTGTCATGTTTGCCTTCAAGGGGAAAAAAGACTTACAGACATAATGAAACAGAAAGAAGCACCCCATAGTTTATACAACAAATTAAAGTTATGTGTGTCAGAAATTGATTGGTGTATATATAAGACCATGTTTATGTGCGAGAAGTGTGTAACAATGTTGAACACAGCATTTGAATTCAAGTGTCAGTGTATTAAATCTacagaaattttcaaaaactttttaaataaattgggtATTGAAGAACACAGGATTGATGTGAAACGAAACGAAACAAGTACAACAATTGTggaagaaaattcaaaattgtctAATGATAAATCAGAACTAAAACCAGCATCTTTTGTTCATGTAAGCCCTGATCAACAACTGTTTACACCTGGCCAACATCTTCAAAATGTGATAGTTTCTCCTAATGCAACACAAAGTGCTtttcctaatttattttttaatttgatcccaacaaatttattgaaaccatCTTCAAATCCACCTCCTTTAACTTCTGTTAGTAGGCCTCCACTATCAAAGACTATTCCTCAAGGGAAAGATGCAAATCAAAATATGTTTGTTAACATAAACAATACTCTTCATAGAATTTTTCCTGTTATTTCTCCAACAAAAGATAATTCCATTGTTCAGTCATCAACAAATCATAGTGTTGTTCCAtctattttaacaaataatatcCAACCAGAAATTACAAAAGCTACAGTCAAAGCAAAGGAAGTTTCACATATATTATCAGAAAGAAACAGTGAGGAGTTAAGTGTTGAGATTGATCCATCATGTTTTGATTTAGAAGAAGGGAGTCCTGATAGTGTTAATACATCTGAAATGAACATATTAAGAGACTGGGAAGATGTTATTGTAAGTAACAAAATATCTTCAGAGCGTGACAATATAAATATCAGAACGTCCTTAAATAATTCCCTTCCTACATTAAACAAAATGCTGGAAGTTAACAATGGCCTTACACCTCTTGACATGGGAAATGTTCATAAAGGAAGTAATATTCATAATTCCCAAAGTACCAGTGCTACAGTTGCCTCAAAACAGCAGcTATTGACTGGTAATTATGTGCCTATTTGCCCGAAATTACCCGAACATCTAGCCTCTATGGATTTTGAAGATAAAATTGAGTTTTTTAATGCAGGACATTTTATGACACAAAAAGAACCTGAGAAATCATCAGCTATAGATTGCTTAAGAATATTTTCTTGTGAAATGTGTTCAAATACATTTGACTCTTTACAAAAGTTAAACAGCCATATCAAACAACATCATTCTGGAAAGTTTCCATACAGATGTAAATACTGTTTTGTTGAATTTGCAGTTCGGTCGCAATTCAAAGAACATTTACATGCCCACTTATCAGAATCTGGTGATAATTATACAAAAGATACCATCACATTAGACGATTTGAATTCTGAACATCATGaatcattaatattaagtTGCATAAATTATAAACCCAGTCCCCAACAAAAAACTGAACAAACAGAAGGAGAAGGTGAAGTTGAAACTGGCGAATTCAAATGTGAACAGTGTCCTAGAAGATTTAATAGTTTACATGGTTTATCTCGACACAAAGTACGAAAGCATAACTTTAAAGCaaagaaaaagtattttataaaaggcATGAAAAATGCCAGATGTGATATTTGTAATAGAGAATTTTCTACACAATCTTATTTGCAGTTGCATATTAAACTGCATTATCGCAAAAGTGATTTTAGACGTAAAGTTTTTTGTAAGGAATCATACACTTCTGACAGCAACTTCTTAAACTTCAATGATAAAAATCAATACGAAGAATACAGCATGATAGACAATCATATGTTGGATGTTGATATTCACATGGATACTGACGAATCATTTTCATTAGATGCAAATGTAGGAGAAACTTTTACAGAAGGTTCTTGTGTTTcttcaaaaaatgttaaagaaacTCCTGATATGGATACCtcattatcaacatgtaataCTACAGCGGAAACAACCCAAATAGAAAATTCATCAGAAAACTTTGCCATAGACAGCTCTTCTACCGAAACTGTCGATTCTTGTTTAGATGATTCAACAAATGCTGATTTACTTGGTTCTTGTGACAATACAAATCGTAGTACACTTTTGAAACTAGATTTAAATGACATTGCTGACGataaaattaaagacaaaaaagaagaaaataaagaacaacgaataggtaaatttaataatgaagtGGAACAAAATAGAAGTGGAACtgaaaataaaagcaatattgaaaatgaaagtaaagAAATTAATGAGACTGTATCAGAACTTATAGATATATTAGAAAACAATGATGTCAGTAATGTTAGCAATAAGGATGAAAAGGTTGAAGCCAAAGTCTGCCTTTCAATGGAGATTTTAGCCGACAAAAATGTGGAACCAAAGAAACAGAAATGTGAATTTCCTGTACTAcaagaaaacgaaaaaaaggaaaactgtGATCCTCAACCACTTAAAGATTTTAAAGTAAGTGgtgatagtaaaaaaaattccatTAGAAATGATGACGTTACAGTATCTAATGTAggcataaaattgaaaattaacttacgaaatattaaacaaaatagcCGAGAAGAAACCGTCGAGAAAAATAGAGAAGATTTCGTTAAGGAAGCAAGACAAGGTGAATTAGTAGCtccaaaacaacaaaaacatatTGAAGACCCGCCAGCAAATGCAATTGattcaaaaaaatgtaaagagAAAACCAGAAAAAGTGGTAATTCACGAACGTTTTCTAGAAAACGTAAGGGAGGTTCATCCAAAAAGTCATCAAAGAAAAAATCTAAAGCTAGTAAGGTAAATGAACCTGTAACTGATTTGACACCCACTTTGGAAGAAATCAGTGTTGCAGAAGAAGTAAATGCAACACACTTAAAATCACTCGAAAATAAGAAGCTGATGTGTGGTATAACATTATCTAATGATGCACCACCGACAGACAATGTAACATCACCAGCAGATAATGTGATGCCAATAGAAAATGAAATACTAAAAGACAATGCAACGCCGATAGAAAATGTAATGCCAGCAAATAGTGTTATACCAGCCGATGTTACCTTATCAGCAGATGACACAATCATGAACGATACCGAAAACGAAAATCAAACGTTCTTTAGCGgctataaaattgaaatggtTAATGGTCGTCCCAAGTgtaatttttgcaataaacTTTTCAGCAGAAAACATGATTTGAAACGTCATATGAATAACATTCATTTGAAAGCTATAAAGTACAAGTGTCATCTATGTGATGTCACTTTTTATGAGGCGTTTCATCTTACGAGACACCTGCGTCAgcataattgttttttaacatGTGCCGTTtgtccgaaaaatttcagtgcACTACGAGATCTGAAATGTCATGTGGACTCTATTCATAAAGAAGATTCGTCTGTTCAGTGTGGAACTTGCAGTATTGTGTTTGCAAACctagatgagttgaaagatcACATTCAGCAGCATGATAGGGAGGTGATATACAAGTGTCACCTTTGTACCGATGAGTTTTGTGAATCTCGGGAATTAACAAAACACCTCGTAGGACATAGTGGTATGTATTCGTGTGGTACTTGTCAGGCTACATTTGCAACTGAACATGAATTGAATTTACACCTTAAAGTGCACTCGTTGAACGTCTCTGAAGATACGAAATACGAATGCGAGGTTTGtcataataaatacaagaagAAACGGTACTTAGCGAATCACATGAAGCATTCGAAACATAATCGTAGTTTGGAGAAAAAAGATGCAGATGAGGTGTATGTTAACAGGGTAGAACGTAATAATTCTGATGATTCCACCTAG
- Protein Sequence
- MYFMSDFCHVCLQGEKRLTDIMKQKEAPHSLYNKLKLCVSEIDWCIYKTMFMCEKCVTMLNTAFEFKCQCIKSTEIFKNFLNKLGIEEHRIDVKRNETSTTIVEENSKLSNDKSELKPASFVHVSPDQQLFTPGQHLQNVIVSPNATQSAFPNLFFNLIPTNLLKPSSNPPPLTSVSRPPLSKTIPQGKDANQNMFVNINNTLHRIFPVISPTKDNSIVQSSTNHSVVPSILTNNIQPEITKATVKAKEVSHILSERNSEELSVEIDPSCFDLEEGSPDSVNTSEMNILRDWEDVIVSNKISSERDNINIRTSLNNSLPTLNKMLEVNNGLTPLDMGNVHKGSNIHNSQSTSATVASKQQLLTGNYVPICPKLPEHLASMDFEDKIEFFNAGHFMTQKEPEKSSAIDCLRIFSCEMCSNTFDSLQKLNSHIKQHHSGKFPYRCKYCFVEFAVRSQFKEHLHAHLSESGDNYTKDTITLDDLNSEHHESLILSCINYKPSPQQKTEQTEGEGEVETGEFKCEQCPRRFNSLHGLSRHKVRKHNFKAKKKYFIKGMKNARCDICNREFSTQSYLQLHIKLHYRKSDFRRKVFCKESYTSDSNFLNFNDKNQYEEYSMIDNHMLDVDIHMDTDESFSLDANVGETFTEGSCVSSKNVKETPDMDTSLSTCNTTAETTQIENSSENFAIDSSSTETVDSCLDDSTNADLLGSCDNTNRSTLLKLDLNDIADDKIKDKKEENKEQRIGKFNNEVEQNRSGTENKSNIENESKEINETVSELIDILENNDVSNVSNKDEKVEAKVCLSMEILADKNVEPKKQKCEFPVLQENEKKENCDPQPLKDFKVSGDSKKNSIRNDDVTVSNVGIKLKINLRNIKQNSREETVEKNREDFVKEARQGELVAPKQQKHIEDPPANAIDSKKCKEKTRKSGNSRTFSRKRKGGSSKKSSKKKSKASKVNEPVTDLTPTLEEISVAEEVNATHLKSLENKKLMCGITLSNDAPPTDNVTSPADNVMPIENEILKDNATPIENVMPANSVIPADVTLSADDTIMNDTENENQTFFSGYKIEMVNGRPKCNFCNKLFSRKHDLKRHMNNIHLKAIKYKCHLCDVTFYEAFHLTRHLRQHNCFLTCAVCPKNFSALRDLKCHVDSIHKEDSSVQCGTCSIVFANLDELKDHIQQHDREVIYKCHLCTDEFCESRELTKHLVGHSGMYSCGTCQATFATEHELNLHLKVHSLNVSEDTKYECEVCHNKYKKKRYLANHMKHSKHNRSLEKKDADEVYVNRVERNNSDDST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030524;
- 90% Identity
- -
- 80% Identity
- -