Abig001358.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998117.1:29313338-29317608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.008 0.56 11.0 2.9 1 23 411 433 411 434 0.95 2 11 0.0075 0.52 11.1 3.2 1 23 440 462 440 462 0.97 3 11 0.0021 0.14 12.9 3.3 1 23 517 540 517 540 0.94 4 11 5.4e-06 0.00038 21.0 0.8 2 23 557 578 557 578 0.97 5 11 5.3e-05 0.0037 17.9 5.1 2 23 1075 1097 1075 1097 0.96 6 11 0.00019 0.014 16.1 5.2 1 23 1103 1125 1103 1125 0.99 7 11 0.62 44 5.1 0.5 2 23 1130 1152 1129 1152 0.85 8 11 0.00058 0.041 14.6 0.1 2 23 1159 1180 1158 1180 0.97 9 11 0.089 6.2 7.7 1.0 1 23 1186 1208 1186 1208 0.95 10 11 0.00036 0.025 15.3 0.7 1 23 1212 1234 1212 1234 0.98 11 11 0.069 4.8 8.1 5.2 1 22 1244 1265 1244 1268 0.92
Sequence Information
- Coding Sequence
- ATGAATTTTATGTCTGATTTTTGTCGAGTTTGCCTTCAAGGGGAAAAAGGACTTAAAGACATTATGAAGGACAAAGAGGCACCCGACAGTTTATACAGCAAATTAAAGTTATGTGTGTCAGAAGTAGATTGGTGTATATATAAGACCATGTTTATGTGTGAGAAGTGTCTAACAAAGTTGAACACAGCATTTGAATTCAAGTGTCAGTGTATAAAATCTACAGAAATTTTAAGAAACTTTTTAAATCAATTGGGTATTGAAGAAAATAAGACTGACGTGAAACGAAACGAAATAAATTCAACAATTGTGGAAGAAAATTCAAAATCATCCAAAGATAAATCTGAACTAAAACCAGCATCTTTTGTTCATGTAAGGTCTGATCAACAACTATTTACACCTGGTCAACTACAAAATGTGATAGTTTCTCCTAATGCAACACAAAgtgcttttcctaatattttttttaatttaataccaacaaatttattaaaacccTCAAATCCACCTCCTTTAGCTTCTGTTACTAAGTCTCAATTATCAAAGACTGCTCCTCAAGTAAAAGATGCAAATCAAAATATGTTTCTAAGCATAAATAATACTCTTCACAGAATTTTTCCTGTTATTTCTCCAACAAAAGAAAATTCTGTTGTTCAGTCATCAACTAATCATAGTGTTGTTCCATCTATTTCAACAAATAATACCCAACCAGAAACTATAAAACCTATAGTCAAAGTAAAGGAAGTTTCACAGATATTAACTGAAAATAACAGTGAAGAGTTAAGCATTGAGATTGATCCATCATGTTTTGATTTAGAAGAGGAGGAGAGTCTAGACAgtgtaaataaaacagaaatgaACATTTTAAGAGACTGGGAAGATGTTATTGTGAGTAACAAAATATCCTCAGAGCATGACAATATAAATATCAGAACGTCCTTAAGTAATTCCCTTCCTACATTAAACAAAATGCTGGAAGTCAATAATGGCCTTACACCTCTTGATAtgggaaatatttataaaggaAGTAATATTCATAATCAACATGGTACCAGTGTTTCAATTGTTCCAAAACAACAgCCATATGTGGGTAATTATGTGCCTATTCGGCCAAAATTACCTGAACATCTAGACACTATggattttgaagaaaaaattgaGTTCTTTAATGCAGGACATTTTATGACACAAAAAGAACCTGAGAAATCATCAGCTATAGATTGCATAAGAATATTTTCTTGTGAAATGTGTTCAAATACATTTGACTCTTTACAAAAGTTAAACAGCCATATCAAACAACATCATTCAGGGAAGTTTCCATATAgatgtaaatattgttttatggAATTTGCAGTTCGGTCAcaatttaaagaacatttacatGCCCACTTATCAGATTCTGGTGATAATTATACAAAAGATACCATCACATTAGATGATTTAAATTCTGAGCATCATGAATCATTAGTATTAAGTTGCGTGAATTACAAACCCATTCCTACACAAAAAACTGAACAAACAGAAGGAGAAGGTGAAATTGAAACTGGTGAATTCAAATGTGAACAATGTCCTAGAAGATTTAACAGTTTACATGGTTTATCTCGACATAAAGTAAGAAAACATAACTTTAAAGcaaagaaaaagtattttataaaagGCATGAAAAATGCCCGATGTGATATTTGTAATAGAGAATTTTCTACTCAATCTTACTTACAGTTGCATATTAAACTGCATTATCGTAAAAGTGATTTTAGACGTAAAGTTTTTTGTAAAGAATCATACACTTCTGACAGTCACTTCTTAaactttaatgataaaaatcaaTATGAAGAATATAGCATGATAGACAATCATATGTTGGATGTTGATATTCATATGGATACTGATGAGTCATATTCATTGGATACAAATGTGGGAGAAACATTCACGGAAGATATACAAATTCcttcaaaaactataaaacgAACTCCTGGCATGGATATTTCATTATCTACTTCTTATAATACCACAGTAGAAACTACTCAAATGGAAAATTCATCAGAAAACTTTGCCATGGACAGCTCTTCTACCGAAACTGTCGATTCGTGTTTAGATGATTCAGCAAATGCTGATTTACTGAGTCCTTGTGATAATATAAATCCCAAACCACTTCTGAAATCagacttaaattacatttctgaTGATAAAATCAAAGACAAAAACGAAGAAAGTAAAGAAAGACATGTAGGTAAATTTAATAGTGAagttgaaaaaatgaaaagtggAACTGAAAACAAAAGCAGtattgaaaatgaaagtaatgaaaataatgaGACTGTATCAAAACTTATAGATagatttgaaaacaatgatGCCAGTAATGCTAGCAATAAGGATGAAAACATTGAAGCCAAAGTCTGCCTTTCAATGGAGATTTTAGCAGAAAAAAATGTGGAACCAAAGAAACAGATATGTGAATTTCCTGTATTACAAGAAAACGAAAAGAAGGAAAACTGTGATCCTCAGCCACTTAAAGATTTCAATGTAAGTGATGATAGTAAAAAACATTCCATTAGAAACGACGATGTTATAGTATCTGATGTAGGcataaaactgaaaattaactTACGAAATATTAAACAGAATAGTCGAGAAGAAACCGTCGAGAGAAATACAGAAGATTTCGTTAAAGAAACAACGCAAGATGAATTAGTAGTTGTAAAACAACAAGAACATATACAAGATCCGGTAATAAATGTTATAGGTGattcaaaaaaatgtaaagaaaaaaataaaaaaagtggtGATTCACGAACGCTTTCTAAAAAACGTAGGGGATGTTCGTCTAAAAAGTCATCaagaaaaaaatctaaaactaGTAAAGTAACCGTATCAATAACAGATCTGACACTGGCATTGGAAGAAAAGGACGTAAAGGACGTTACAGAAGGAGTAAATTCATCACACTTAAAATTACCAGAAAATAAGAAGCTGATGTATAATGTGACATCATCAGATGATATAACACCGACAGATAATGTAACGCCAACAAATAATGAAATGCTAACAGAAAATGAAGTGCTAAAAGACAATGCAATACCGATAGAAAACGTGATACCGGCAAATAGTATTATAGCAGCAGATGTCAACTCCTCAACAGATGATACAATTATGAACGATACCGAAAACGAAAATCAAACATTCTTTAGCGGTTATAAGATTGAGATGGTTAATGGTCGACCcaaatgtaatttttgtaacAAACTTTTCAGCAGAAAACATGATTTGAAACGTCATATGAATAATATTCATTTGAAAGCGATAAAGTATAAGTGTCATCTGTGTGATGTCACCTTTTACGAGGCGTTCCATCTTACGAGACACCTGCGCCaacataattgttttttaacttgtgctgtttGTCCGAAAAATTTCAGTGCACTGCGAGATCTAAAATGTCATGTGGACTCTATTCATAAAGAAGATTCGTCGGTCCAGTGCGGAACTTGCAGTATTGTGTTTTCAAGCCTTGAGGAGTTAAAAGATCACATCCAGCAGCATGATAGAGAGGTGATATATAAGTGTCACCTTTGTACCGATGAGTTTGGTGAATCTCGGGACTTAACCAAACACCTTGTTGGACATAGTGGCATGTACTCGTGTGGTACTTGTCAAGCTACATTTGCGACTGAACACGAATTGAACTTACACCTAAAAGTGCACTCGTTGAATATCTCTGAAGATACGAAATACGAATGCGAGGTTTGTCATAACAAGTACAAGAAGAAACGATACTTGGCGAACCATATAAAGCATTCGAAACATAATCCTAGTTTGGAGAAAAAGGACACAGATGAGGTGCATGTTAACAGGGTAGAACGTAACAATTCTGATGATTCCACCTAG
- Protein Sequence
- MNFMSDFCRVCLQGEKGLKDIMKDKEAPDSLYSKLKLCVSEVDWCIYKTMFMCEKCLTKLNTAFEFKCQCIKSTEILRNFLNQLGIEENKTDVKRNEINSTIVEENSKSSKDKSELKPASFVHVRSDQQLFTPGQLQNVIVSPNATQSAFPNIFFNLIPTNLLKPSNPPPLASVTKSQLSKTAPQVKDANQNMFLSINNTLHRIFPVISPTKENSVVQSSTNHSVVPSISTNNTQPETIKPIVKVKEVSQILTENNSEELSIEIDPSCFDLEEEESLDSVNKTEMNILRDWEDVIVSNKISSEHDNINIRTSLSNSLPTLNKMLEVNNGLTPLDMGNIYKGSNIHNQHGTSVSIVPKQQPYVGNYVPIRPKLPEHLDTMDFEEKIEFFNAGHFMTQKEPEKSSAIDCIRIFSCEMCSNTFDSLQKLNSHIKQHHSGKFPYRCKYCFMEFAVRSQFKEHLHAHLSDSGDNYTKDTITLDDLNSEHHESLVLSCVNYKPIPTQKTEQTEGEGEIETGEFKCEQCPRRFNSLHGLSRHKVRKHNFKAKKKYFIKGMKNARCDICNREFSTQSYLQLHIKLHYRKSDFRRKVFCKESYTSDSHFLNFNDKNQYEEYSMIDNHMLDVDIHMDTDESYSLDTNVGETFTEDIQIPSKTIKRTPGMDISLSTSYNTTVETTQMENSSENFAMDSSSTETVDSCLDDSANADLLSPCDNINPKPLLKSDLNYISDDKIKDKNEESKERHVGKFNSEVEKMKSGTENKSSIENESNENNETVSKLIDRFENNDASNASNKDENIEAKVCLSMEILAEKNVEPKKQICEFPVLQENEKKENCDPQPLKDFNVSDDSKKHSIRNDDVIVSDVGIKLKINLRNIKQNSREETVERNTEDFVKETTQDELVVVKQQEHIQDPVINVIGDSKKCKEKNKKSGDSRTLSKKRRGCSSKKSSRKKSKTSKVTVSITDLTLALEEKDVKDVTEGVNSSHLKLPENKKLMYNVTSSDDITPTDNVTPTNNEMLTENEVLKDNAIPIENVIPANSIIAADVNSSTDDTIMNDTENENQTFFSGYKIEMVNGRPKCNFCNKLFSRKHDLKRHMNNIHLKAIKYKCHLCDVTFYEAFHLTRHLRQHNCFLTCAVCPKNFSALRDLKCHVDSIHKEDSSVQCGTCSIVFSSLEELKDHIQQHDREVIYKCHLCTDEFGESRDLTKHLVGHSGMYSCGTCQATFATEHELNLHLKVHSLNISEDTKYECEVCHNKYKKKRYLANHIKHSKHNPSLEKKDTDEVHVNRVERNNSDDST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032369;
- 90% Identity
- -
- 80% Identity
- -