Amal002976.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:31420298-31424367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.41 40 5.9 1.3 1 23 291 313 291 313 0.76 2 12 0.068 6.7 8.4 0.8 2 23 404 426 404 426 0.93 3 12 0.0003 0.029 15.8 3.7 1 23 432 454 432 454 0.98 4 12 3.2e-05 0.0031 18.9 0.4 1 23 462 485 462 485 0.93 5 12 7.1e-05 0.0069 17.8 3.2 1 23 491 513 491 513 0.95 6 12 8.6e-06 0.00085 20.7 0.4 1 20 519 538 519 541 0.94 7 12 1.2e-05 0.0012 20.2 2.3 1 23 547 569 547 569 0.97 8 12 2.5e-06 0.00025 22.3 0.5 1 23 575 597 575 597 0.98 9 12 1.2e-05 0.0012 20.2 6.3 1 23 603 625 603 625 0.98 10 12 1.2 1.2e+02 4.5 5.7 2 23 632 653 631 653 0.95 11 12 0.00091 0.089 14.3 3.6 1 23 659 681 659 681 0.98 12 12 1.3e-05 0.0013 20.1 3.1 1 23 687 709 687 709 0.98
Sequence Information
- Coding Sequence
- ATGCAAAACAAAGTTAATGACGGAACTGTGGAGGTTACACCATATTTATACGATTCTTATCTTTGTCGATTATGTGCAAATGAAAATCAGAATGGCACAAAAATTTTTCCTAAAAACGAAAACGAATCAGATTTAAgtaaacttattaataaatatttgcccCTAAAGGTTTATAACGATGGAAAATTGCCACAGTTAATTTGTCCAGGTTGTTACATCCAAGTAGAAGCTACCAAACAGTTTTTAGATCTGGTTGTAGAAGGTCAGAAGAAACTTCgtaatttgttacaattacaaaaagaaactCGAGAACAACATTTACATGgagatattgaaaaattaagttCTGGAACTGCAGTTCCAACATATAGCCAAACAGATGAGaatagtgaaaatatttttattaaaaTATTGTCAAATGGTTCCCTATTTCCACCTGAACATTCACTAACACTGCTTACTGAGGGTTCagaaaaaccaaaaagaagACGTGGTAGACCTCCCAAAACAATTACAGAATGCAATGATAATGAAccacaaaaagaaacaaaacttAAACCTGAATCTGAAGATGAACCTGAAACTGACAATGATGgacgaagaaaaagaaaaataaaagttcctaCAAGATTTCAAGAGGTTGTTCAGGGAAAAGAATTGGAAAAGATTTTTCTGGAACAAGGTGTTATAGATGAAGATTCAACTTCAGACTATGAACAGGTGAAAACGGATAATTTGCAGGCTAATGAAATTATTGGTCGTTTGCAAAGTAAAGATGGTGATAATCTAGGAGAATTAATTGTAGTCAACAGagtctcaaataaaatgagaaGTACATTTAAGAATGAAGTCCCAAGAAGAAGGAAAAAGCATGAATGCGAAATATGTGggaaagaatttttatattatggtCGATATGAAAGTCATAAATCACTTCATGAGAATGGTAAATTTCAGTGTAATTCATGTATTTTTCGTGCTAGTAACAAAATTTCCATTGAACGCCATCATAAAGTTACTGGCCATAATGGCTTATTACAATTACAGAGTGAATCATTGgAAGAACTTCAACAACAAGATATAATCAATGTGGAACAAGAAATTGATGTTACTAATACTCTTGAATCTAATTCTGTAGATGCAAAAGATTTAAAAGATTGTTCCAGAGATAATATAGAAGATAGTTCTAATGATGCTCCTAACAAAAATTCATGTGAAGTATGTGGCAAAAATTTTATGTGTAGACAAAATCTTGATGTCCATATAAAGGCTgtacataaaaatatgaaacctCATCAGTGCAATAGGTGTAAAAAAACGTTTCCCTATCTCAATAGTCTAAAGTggcatttattaaaacacttagataaaaatgaaaagttttatCCTTGTGAGGTTTGTAAGAAGGTGTTCAATCATCCAAGCAGTCTTATTTATCATCGCGAGGCTGAACATAATAATGGTCAACGTTTTGTATGTATCAAATGTGATAAGAGCTTCAAGCACAAGCAATTATTGCAACGACATCAACTTGTACATTCAGAAGAGCGACCTTATCGGTGTAAACAGTGTGATGCAAGTTTTAAAACACGAGCAAATCTTATAAATCACATGCCTATTCATACTggcgaaaaaaaatatttttgttcacAATGCGGACAGACATTTGCCCACAAAACGTCATTAACTTTGCACATACGATGGCACAGTGGCCAGAAACCGTTTCAGTGTGATGTTTGTCTGAAGTCTTTTTCTCAAAAGGGCAATTTAGCTGAGCATAAACGGATTCATACAgGTGAGAAACCATACAATTGTGAACATTGCAACAGAAAATTTACTACTTCTTCACAATATAAGCTTCATATGAAACGACACAGTGGCGAACGTCCGTGGAGGTGTGAATATTGCCCAAAAACTTTTCTCCACAGAGACACTTGGAAATGTCATACCAGACGGCATAAAAACGAAAAGCCGTACCGGTGTGAACagTGCTTTAAAGGATTTACTGAACAATGTGCTTTAAAAAAACACGAAAGATTACATACTGGCGAAAAGCCTTATATTTGTGAATTATGTAGTAGAAGTTTTGCTGATTGTTCTAATTTATCTAAACACAGAAAAACCCATGAAAACGAACCTAATTTAACTGACAATGAGACACCAGAAATCAAAGTCTTAACGTCATCGAGGGACGatcaAAACGATATATTTTATGTCACATTAGATCCAAATTCTTCAGAAATTCAGTCACCTTCATTAGTACAAATTATGGAGCAattaagtacaaaaaataacgAGAATGATGAAACACCCTccaaaattaacaatatttctCCTATATCTGCTAAAGATAATGCAGTGATACAACAAATTATCGATCAAGAAGGAAATACCATGTCAGTTGCTTTACCAGACGGACAGATGCTTAGGGTAGTTACCACAGTGGAAAATGGagagcaaaattttaaaggtttGACAAACGACGGTAGTTTAATACCACTAAATGTTAATTTCGAAGAAGatgaaaaaacaatatttgaaaacgAACCAATGAATGAAGCGTTAGATGAGAAAGAAGATGAATTTGAAGAATGGACGATTAAGGAGAAGGATGATTCAAAAGTGCCGCTTATACATTTTTTGGATAGTGATATACAAATTTTACCtggacaaaaaattgaaaataatctaCAGTTATTGGTAGAAGGTCAGAATGTTTGTTTTGTAACAGCCTACAATTCAGATGATTCCACGAATTCACAGTATTTAGCAATGGCCTAA
- Protein Sequence
- MQNKVNDGTVEVTPYLYDSYLCRLCANENQNGTKIFPKNENESDLSKLINKYLPLKVYNDGKLPQLICPGCYIQVEATKQFLDLVVEGQKKLRNLLQLQKETREQHLHGDIEKLSSGTAVPTYSQTDENSENIFIKILSNGSLFPPEHSLTLLTEGSEKPKRRRGRPPKTITECNDNEPQKETKLKPESEDEPETDNDGRRKRKIKVPTRFQEVVQGKELEKIFLEQGVIDEDSTSDYEQVKTDNLQANEIIGRLQSKDGDNLGELIVVNRVSNKMRSTFKNEVPRRRKKHECEICGKEFLYYGRYESHKSLHENGKFQCNSCIFRASNKISIERHHKVTGHNGLLQLQSESLEELQQQDIINVEQEIDVTNTLESNSVDAKDLKDCSRDNIEDSSNDAPNKNSCEVCGKNFMCRQNLDVHIKAVHKNMKPHQCNRCKKTFPYLNSLKWHLLKHLDKNEKFYPCEVCKKVFNHPSSLIYHREAEHNNGQRFVCIKCDKSFKHKQLLQRHQLVHSEERPYRCKQCDASFKTRANLINHMPIHTGEKKYFCSQCGQTFAHKTSLTLHIRWHSGQKPFQCDVCLKSFSQKGNLAEHKRIHTGEKPYNCEHCNRKFTTSSQYKLHMKRHSGERPWRCEYCPKTFLHRDTWKCHTRRHKNEKPYRCEQCFKGFTEQCALKKHERLHTGEKPYICELCSRSFADCSNLSKHRKTHENEPNLTDNETPEIKVLTSSRDDQNDIFYVTLDPNSSEIQSPSLVQIMEQLSTKNNENDETPSKINNISPISAKDNAVIQQIIDQEGNTMSVALPDGQMLRVVTTVENGEQNFKGLTNDGSLIPLNVNFEEDEKTIFENEPMNEALDEKEDEFEEWTIKEKDDSKVPLIHFLDSDIQILPGQKIENNLQLLVEGQNVCFVTAYNSDDSTNSQYLAMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030457;
- 90% Identity
- -
- 80% Identity
- -