Abig001460.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998117.1:31772449-31776568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.27 19 6.2 1.3 1 23 291 313 291 313 0.80 2 12 0.055 3.9 8.4 0.8 2 23 405 427 405 427 0.93 3 12 0.00063 0.044 14.5 4.1 1 23 433 455 433 455 0.98 4 12 1.3e-05 0.00089 19.8 0.7 1 23 463 486 463 486 0.93 5 12 5.7e-05 0.004 17.8 3.2 1 23 492 514 492 514 0.95 6 12 7e-06 0.00049 20.7 0.4 1 20 520 539 520 542 0.94 7 12 9.7e-06 0.00068 20.2 2.3 1 23 548 570 548 570 0.97 8 12 2e-06 0.00014 22.3 0.5 1 23 576 598 576 598 0.98 9 12 9.7e-06 0.00068 20.2 6.3 1 23 604 626 604 626 0.98 10 12 5.4 3.8e+02 2.1 6.0 2 23 633 654 632 654 0.95 11 12 0.0057 0.4 11.5 5.4 1 23 660 682 660 682 0.98 12 12 3.6e-05 0.0025 18.4 1.7 1 23 688 710 688 710 0.98
Sequence Information
- Coding Sequence
- ATGCAAAACAAAGGGAATGACGAAATAGTGGAGGTTACACCATGTTTATACGATTCTTATCTTTGTCGATTATGTGGAAATGAAAATCTAAATGGTACAAAAATTTTTCCTAAAGACGAAAACGAACCTGATTTAAGTCagcttattaataaatatttgccCCTTAAGGTTTATGATGATGGAAAATTGCCTCAGTTAATTTGTCCAGGTTGTTACATTCAAGTAGAAGCCACTAAACAATTTTTAGATTTGGTTGTAGAAGGTCAGAAGAAGCTTCGTGACTTTTTACAATTGCAAGAAACCCGAGAGCAACATTTAGATGGTGatgttgaaaaaataaatctggaaaATGCAGTTAAAACATATGTCCAAACTGATGGGAATggtagaaatatttttattcaagTATTGTCAAATGATTCCTTATTTCCACCTGAACATTCATTATCACTGCTTGCTGAGGGTTCAGAAAAACCAAAGAGGAAACGTGGTAGGCCTCCTAAAACGACAACTACAGAGTGCAATGAAAATGAACCACAAAAAGAGATAAAACTCAAACCTGAATCTGAAGATGAACCTGAAACTGACAATGATGgacgaagaaaaagaaaaataaaagtacCTACAAGATTTCAAGAAGTTGTACAGGGAAAAGAACTGGAAAGGATTTTTATAGAAGAAGGTGTTATAGATGAAGATTCAACATCTGATTATGAACATGTTAAAGCAGATCATTTAGATGCCAATGAGATTATTGGTCGCTTACAAAGTAAAGATGGTGATAATTTAGGAGAATTAATTATAGTTAACCGAGTCTCAAATAAAATGAGAAATACATTTAAGAACGAAgTCTCAAGAAGAAGGAAAAAACATGAATGTGAAATATGTGGAAAGGAATTCTTGTATTATGGTCGATATGAAAATCATAAATCGCTTCATGAGAATGGTAAATTTCAGTGTAATTCATGTATTTTTCGTGCTAGTAACAAAATTTCCATTGAACAGCATCATAAAGTTACTGGTCATAATGGCTTATCACAATTACAATGTGAATCACTTGAAGAAGAACCTCAACAACAAGATATAATCAACGTGGAACAAGAAACTGATGATGCTAATACTCCTGAATCTAATTCCATAGACACAGTAGATTTAAAAGATTGTTCCGGGGATAGTAAAGAAGATAGTTCTCATGATGCTTCCAGTAAAAATTCATGTGAAGTATGTGGCAAAAATTTTATGTGTAGACAAAATCTTGATGTCCATATAAAGGCAGTACATAAAAATATGAAACCCCATCAGTGCAATAGGTGTAAAAAAAAGTTTCCTTATCTCAATAGTCTAAAGTGGcatttattaaaacacttaGATAAAAATGAAAAGCTTTATCCATGTGAGATCTGTAAGAAAACATTCAATCATCCCAGCAGTCTTATTTATCATCGCGAAGCTGAGCATAATGATGGTCAACGTTTCGTATGTATCAAATGTGACAAGAGCTTCAAGCACAAGCAATTATTGCAAAGACATCAACTTGTACATTCAGAAGAGCGACCTTATCGTTGTAAACAGTGTGATGCAAGCTTTAAAACACGAGCAAATCTTATAAATCACATGCCTATTCATACtggtgaaaaaaaatatttttgttcacAATGTGGACAGACATTTGCCCACAAAACGTCTTTAACGTTGCATATACGATGGCACAGTGGCCAGAAACCATTTCAGTGTGATGTTTGTTTAAAGTCTTTCTCACAAAAGGGCAATTTGGCTGAGCATAAGCGGATTCATACAGGAGAGAAACCATATAATTGTGAGCATTGCAACAGAAAATTCACTACCTCTTCTCAATATAAACTCCACATGAAACGACACAGTGGTGAACGACCATGGAGATGTGAATTTTGCCCAAAAACTTTTCTCCACAGGGACACTTGGAAATGTCATACTAGAAgacataaaaatgaaaaaccgTACCAATGTGAGCAGTGTTTTAAAGGCTTTACTGAACATTGTGCTTTAAAAAAGCACGAAAGATTACATACTGGTGAAAAGCCTTATATTTGTGAATTCTGTAATAGAGGTTTTGCTGATTGTTCGAATTTggcgaaacacaaaaaagtccATGAAAACGAACCTAATTTAGTGGAGACACCGAAAATCAAAGTTTTATCATCAAAGGACGATCAAAACGATATATTTTATGTAACATTAGATCCAAATTCTTCCGAAATTCAGTCGCCTTCACTAGCGCAAATTATGGAGCAATTGGGTACAAAAGATAACGATAATGAAGAAGCACACTCCAAAGCAGACATTTCTACTAAATCTACTAAAGATGATTCGGTTATACAACAAATTATCGATCAAGAAGGAAATACCATGTCAGTTGCTTTGCCAGATGGACAAATGCTTAGAGTAGTTACTACAATAGAAGACGGGGAGCAGAACTTTAAAGGTTTGACAAATGATGGTAGTTTGATACCACTAAATGTTAATTTTGAAGATGGAAGAACAGTATTTGGAAACGAACAAATGAATGTTacattagaagaaaaaggaaACGAACTTGAAGAATGGACAACTAAGAAGAAAGATGATTCAAAAGTTGCATCAATTCCACTTATACAATTTTTGGATAGCGACATACAGATTATACCtggacaaaaaattgaaaataatttacagtTATTGGTTGAAAGCCAAAATGTTTGTTTTGTAACATACAATTCAGATGATCCTACGAATTCACAGTATTTAACAATGGCCTAA
- Protein Sequence
- MQNKGNDEIVEVTPCLYDSYLCRLCGNENLNGTKIFPKDENEPDLSQLINKYLPLKVYDDGKLPQLICPGCYIQVEATKQFLDLVVEGQKKLRDFLQLQETREQHLDGDVEKINLENAVKTYVQTDGNGRNIFIQVLSNDSLFPPEHSLSLLAEGSEKPKRKRGRPPKTTTTECNENEPQKEIKLKPESEDEPETDNDGRRKRKIKVPTRFQEVVQGKELERIFIEEGVIDEDSTSDYEHVKADHLDANEIIGRLQSKDGDNLGELIIVNRVSNKMRNTFKNEVSRRRKKHECEICGKEFLYYGRYENHKSLHENGKFQCNSCIFRASNKISIEQHHKVTGHNGLSQLQCESLEEEPQQQDIINVEQETDDANTPESNSIDTVDLKDCSGDSKEDSSHDASSKNSCEVCGKNFMCRQNLDVHIKAVHKNMKPHQCNRCKKKFPYLNSLKWHLLKHLDKNEKLYPCEICKKTFNHPSSLIYHREAEHNDGQRFVCIKCDKSFKHKQLLQRHQLVHSEERPYRCKQCDASFKTRANLINHMPIHTGEKKYFCSQCGQTFAHKTSLTLHIRWHSGQKPFQCDVCLKSFSQKGNLAEHKRIHTGEKPYNCEHCNRKFTTSSQYKLHMKRHSGERPWRCEFCPKTFLHRDTWKCHTRRHKNEKPYQCEQCFKGFTEHCALKKHERLHTGEKPYICEFCNRGFADCSNLAKHKKVHENEPNLVETPKIKVLSSKDDQNDIFYVTLDPNSSEIQSPSLAQIMEQLGTKDNDNEEAHSKADISTKSTKDDSVIQQIIDQEGNTMSVALPDGQMLRVVTTIEDGEQNFKGLTNDGSLIPLNVNFEDGRTVFGNEQMNVTLEEKGNELEEWTTKKKDDSKVASIPLIQFLDSDIQIIPGQKIENNLQLLVESQNVCFVTYNSDDPTNSQYLTMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032283;
- 90% Identity
- -
- 80% Identity
- -