Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055657.1:844711-847496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0022 0.22 13.1 0.1 2 20 223 241 222 243 0.94

2 10 0.032 3.1 9.4 1.3 1 23 256 278 256 278 0.97

3 10 3.8e-05 0.0037 18.6 0.6 2 23 350 372 349 372 0.94

4 10 5.2 5.1e+02 2.5 0.1 1 14 431 444 431 452 0.75

5 10 1.7e-05 0.0017 19.7 0.4 2 23 487 508 486 508 0.97

6 10 2.2e-05 0.0022 19.4 1.0 1 23 514 536 514 536 0.98

7 10 0.00033 0.033 15.7 4.1 1 19 542 560 542 565 0.91

8 10 1e-07 9.8e-06 26.8 0.6 1 23 571 593 571 593 0.99

9 10 2.2e-06 0.00022 22.5 2.2 1 23 599 621 599 621 0.99

10 10 1.2e-06 0.00012 23.4 1.3 1 23 627 649 627 649 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0022	0.22	13.1	0.1	2	20	223	241	222	243	0.94
2	10	0.032	3.1	9.4	1.3	1	23	256	278	256	278	0.97
3	10	3.8e-05	0.0037	18.6	0.6	2	23	350	372	349	372	0.94
4	10	5.2	5.1e+02	2.5	0.1	1	14	431	444	431	452	0.75
5	10	1.7e-05	0.0017	19.7	0.4	2	23	487	508	486	508	0.97
6	10	2.2e-05	0.0022	19.4	1.0	1	23	514	536	514	536	0.98
7	10	0.00033	0.033	15.7	4.1	1	19	542	560	542	565	0.91
8	10	1e-07	9.8e-06	26.8	0.6	1	23	571	593	571	593	0.99
9	10	2.2e-06	0.00022	22.5	2.2	1	23	599	621	599	621	0.99
10	10	1.2e-06	0.00012	23.4	1.3	1	23	627	649	627	649	0.96

Sequence Information

Coding Sequence: atggatAACAGCGAAACGAACAGAGATTTGCTAGAAAACGTCTCGATAACAGACGTAGGGGGCTCGCAGTACATGTTGCAACGAATGTCTGTCGAAAACCAtcatttacttaataatgaACTTCTCCAACATCACAGTGGTTTAGTTGTAGACTTAGGGGGTGGCGATTTTATTCCAGTTAATTACACTTCTGATGACTTACTGCCTCAAGAATTAACCGAAGAAGATCGCAATTTGGCAGCTGCCTTAGTTGCAGTTCAATTCaatcaacaacaaaaacaacaacataaCCAACAAGACTctactgtaattattaatacttCCCTAGCTTCATTAGTTAATCAAAACGATCTAGATAAAGTAACAGCAAGTGCAATAAATAGCAATTATTTGCACATAGTAGGGGCAGACGGGCAAGGGCTCTATATTGAAGAAAAAACTCCTCTTCCTAAACTCTTGGATACCCGTTTTCAAACTAACAGTCAGGAAGATTCAAATCGTACTGTTCAAAAACAAGATATAAAATCAGAAGAGGAAAATAGTCAAAAAGAATCAGATAGCGAAACAAAAAATGACAACCGTTCTTCAAAGAAGAGCTTGCCCCACAAAAAGCGTATATCTCGAAAACTTAAAAAGGCTCCTCCCTCTGGCAAGAATAAGGGCCAAAAATGTACTCTTTGTGAGCAAGTCTTTCCTAATAATGAAGAACTGTCAGCTCATCAAACCTTATGTCAAACAACTATAACGCCAGTGCCttctcatttatttaattgtcaaCTATGCAGTGCCACATTTTATAATCAGTTGAGCTTCTTTGAACACTTGAAGGCACACTATGAACCTACCCAAAACACTCAGCTTGTTACACCAACATCAGCCACTGCTACAAATGATCAATCCGTACCACCTGTTTTAAATGACCCAACAACAACTTCTGTAACTTGTGAAGACCATTCTGCTACAGCTGGGAACTATGTTGGCGATAAAACAGTCATAAAAACTGAATTGGAACAAAAAGAAGTTTTGCTTTCATCCCTATTAAACCTAAACTGTTTGCAGTGCAATAAAACATTCAAGCGACAAAAAGCCTATGAAGCACACATAAGAGATATTCACAACAAAGTTGAACTTGCCGACTTCAGCGAATCAGAAGATCTTATGGATGGCATTGACGTAAACGTTGATGATCCTGGGACGTTATCAGATGACGACTCGAAAAATTGGATGAAGTACAAAGATGAAGACCTTTATCAAGCTGAGGCAGATTTAAGAGAATTAGAAGCAGAAGAACATGTTTGCCAAAACTGCAAACAACCTTTTCCCATAAGGGCGATTTTATTGCAACATTTGGTCACTTGTAAACCCCCAGAAGGCCAACAAGCAACAGAGCCTACAAAACAAGCTTGGAATGCTAGCGGAGGAAAAAAACGAAACAGAAAAAAGCAGCAGGGAGATTTAAGTTGTCCTGAATGCGATCGTGTTTTCATGTACAGGAACTCCTTGTTATATCACATGAGAAGTCACACGGGTGATCGACCGCATCAATGTGACCAATGCGGAAAGAAGTTCTTTGCGGCCAGTGCACTTAAAGTGCACCTTAGGCTACATTCAGgcGTTAAACCCTACAAATGTGACCACTGCGGACGTTATTTCCGACAGTGGGGTGACCTAAAGTACCACTGCATTTCGTTACATTCGGACCAAAAGAACTACCAATGCGAGTATTGTGGCAAAGAGTTTGCTAGAAAATATTCTCTAGTCGTCCATAGGAGAATTCATACAGGAGAGAAGAATTATCGTTGCGAATTCTGCGATAAGACTTTTAGAGCTTCATCTTACCTCAACAATCATCGTAGAATACATACAGgtgAAAAGCCTCATGCATGCGAAATTTGTGGAAAACCGTTTAGAGTTCGTTCAGATATGAAAAGACACTTAAAAACTCATAGAAGACGGCGGCAATCCAGAAGCACCATGTCTCCATCGTGTGATATAGTTGCGAAAAAAGAAGAACTGAATGAAAGCAGTGGTAACATGCTCATTGATTCTGATACAGATCCTCACCCTCCAGAAGTGGAACATGAAAATGCCGTACAAACACTCCAATTTGACCAAGATCCTTTGGAAATTAGAGATGGCAGCACACTTTATGTTATGCCCATACTAATCACTTAA
Protein Sequence: MDNSETNRDLLENVSITDVGGSQYMLQRMSVENHHLLNNELLQHHSGLVVDLGGGDFIPVNYTSDDLLPQELTEEDRNLAAALVAVQFNQQQKQQHNQQDSTVIINTSLASLVNQNDLDKVTASAINSNYLHIVGADGQGLYIEEKTPLPKLLDTRFQTNSQEDSNRTVQKQDIKSEEENSQKESDSETKNDNRSSKKSLPHKKRISRKLKKAPPSGKNKGQKCTLCEQVFPNNEELSAHQTLCQTTITPVPSHLFNCQLCSATFYNQLSFFEHLKAHYEPTQNTQLVTPTSATATNDQSVPPVLNDPTTTSVTCEDHSATAGNYVGDKTVIKTELEQKEVLLSSLLNLNCLQCNKTFKRQKAYEAHIRDIHNKVELADFSESEDLMDGIDVNVDDPGTLSDDDSKNWMKYKDEDLYQAEADLRELEAEEHVCQNCKQPFPIRAILLQHLVTCKPPEGQQATEPTKQAWNASGGKKRNRKKQQGDLSCPECDRVFMYRNSLLYHMRSHTGDRPHQCDQCGKKFFAASALKVHLRLHSGVKPYKCDHCGRYFRQWGDLKYHCISLHSDQKNYQCEYCGKEFARKYSLVVHRRIHTGEKNYRCEFCDKTFRASSYLNNHRRIHTGEKPHACEICGKPFRVRSDMKRHLKTHRRRRQSRSTMSPSCDIVAKKEELNESSGNMLIDSDTDPHPPEVEHENAVQTLQFDQDPLEIRDGSTLYVMPILIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030433; iTF_00031294;
90% Identity: iTF_00030433; iTF_00031294;
80% Identity: -