Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376708.1:21608215-21611548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00037 0.092 14.7 0.1 2 20 224 242 223 244 0.94

2 10 0.017 4.2 9.4 1.3 1 23 257 279 257 279 0.97

3 10 2e-05 0.005 18.6 0.6 2 23 351 373 350 373 0.94

4 10 2.8 6.9e+02 2.5 0.1 1 14 432 445 432 453 0.75

5 10 9.2e-06 0.0023 19.7 0.4 2 23 488 509 487 509 0.97

6 10 1.2e-05 0.003 19.4 1.0 1 23 515 537 515 537 0.98

7 10 0.00018 0.044 15.7 4.1 1 19 543 561 543 566 0.91

8 10 5.4e-08 1.3e-05 26.7 0.6 1 23 572 594 572 594 0.99

9 10 4.1e-06 0.001 20.8 2.2 1 23 600 622 600 622 0.99

10 10 6.4e-07 0.00016 23.4 1.3 1 23 628 650 628 650 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00037	0.092	14.7	0.1	2	20	224	242	223	244	0.94
2	10	0.017	4.2	9.4	1.3	1	23	257	279	257	279	0.97
3	10	2e-05	0.005	18.6	0.6	2	23	351	373	350	373	0.94
4	10	2.8	6.9e+02	2.5	0.1	1	14	432	445	432	453	0.75
5	10	9.2e-06	0.0023	19.7	0.4	2	23	488	509	487	509	0.97
6	10	1.2e-05	0.003	19.4	1.0	1	23	515	537	515	537	0.98
7	10	0.00018	0.044	15.7	4.1	1	19	543	561	543	566	0.91
8	10	5.4e-08	1.3e-05	26.7	0.6	1	23	572	594	572	594	0.99
9	10	4.1e-06	0.001	20.8	2.2	1	23	600	622	600	622	0.99
10	10	6.4e-07	0.00016	23.4	1.3	1	23	628	650	628	650	0.96

Sequence Information

Coding Sequence: ATGGACAGCAACGAAACGAACAGAGATTTGCTTGAAAACGTCTCTATAACAGACGTAGGGGGCTCACAGTACATGTTACAACGAATGTCTGTTGATAACCACCATTTGCTTAATAATGAACTTCTGCAACATCACAGCGGATTAGTTGTAGATTTAGGGGGAGGCGATTTTATCCCTGTTAATTATACTTCTGATGACTTATTGCCTCAAGAATTAACCGAAGAAGATCGCAATTTAGCAGCTGCTTTGGTTGCTGTTCAATTCAATCAACAACAAAAACAACAACATAACCAACAAGACTCTACAGTAATTATTAACACTTCCCTAGCTTCATTAGTTAATCAAAACGATCTAGACAAAGTAACAGCCAATGCGATAAACAGTAACTACTTGCATATAGTAGGTCCCGATGGACAGGGGCTTTATATTGAAGAAAAAGGTCCTCCTCTTCCTAAACTTATAGATTCTCGTTTTCAAACTACTAATCAAGAAGATTCGAATCGTACAACTCAAAAACAAGATGCCAAGTCAGAAGAAGAGAACAGTCAGAAGGAATCGGATAGCGAAATTAAAAACGATAACCGTTCTTCGAAAAAGAGTTTGCCTCACAAGAAGCGTATATCTCGAAAACTTAAAAAAGCTCCTTCTTCTGGCAAGAATAAAGCCCAAAAATGTACTCTATGTGAGCAGGTGTTCTCTAATAACGAAGAACTGTCGGCCCATCAGACTCTTTGTCGAACAACTATAACGCCAGTGCCTTCGcatttatttaattgtcagctatgcagtgccaccttttacaaccaattgagctttttcgaacatttaaaagctcactacgaaccaACCCAAAACAACCAGCTCGTTGTGCCAACATCGTCCACCACAAATAACGTTCAATCTTCTGTATCGTCGTCTGTTTTAAACGATCCAACAGCGACTTCTGTAGCATGTGAAGACCCTCCTGTTGGGAACTACATTGAAGAGAAAGCAGTCGTGAAAACTGAATTGGAACAAAAAGAAGTACTGCTTTCGTCTTTATTAAACTTAAACTGCCTCCAATGCAATAAAACATTCAAGAGACAGAAAGCCTATGAAGCTCACATTAGAGATGTTCATAATAAAGTCGAACTGGCCGATTTTAGCGAATCGGAAGATCTTATGGATGGTATTGATGTCAACGTTGATGATCCAGGAGCATTGTCGGATGACGAATCGAAGAATTGGATCAAGTATAAAGATGAAGACCTTTATCAAGCTGAAGCAGATTTAAGAGAACTGGAAGCAGAAGAACACGTTTGTCAAAACTGTAAGCAACCCTTCCCCATCAGGGCTATTTTATTACAACATTTGGTGACTTGTAAACCGCCAGAAGGTCAACAAGTAACAGAACCTACAAAACAAACTTGGAATGCAGGAGGAGGAAAAAAACGAAATAGAAAAAAGCAACAAGGAGACCTAAGTTGTCCTGAATGCGATCGCGTTTTTATGTACAGAAACTCGTTGTTATATCACATGAGAAGTCACACAGGAGATCGACCCCATCAGTGTGATCAATGCGGGAAAAAATTCTTTGCAGCCAGTGCACTTAAAGTGCATCTCAGACTACACTCGGgtgttaaaccgtacaagtgcgatcactgcggacgttatttccgacagtggggcgatctcaagtaccactgcatttcgttacattcggaccaaaagaactaccaatgcgaatattgcggcaaagagttcgctagaaaatattctctagttgtacatcggagaatccataccggggaaaagaattaccgatgcgaattctgtgagaagaccttcagggcttcgtcttatctcaataaccatcgtagaatacacactggtgaaaaacctcacgcgtgtgaaatttgcggaaaaccatttagagttcgctcagacatgaagagacatcttaagactcatagaagacgcagaCAGTCGAGGAGCACCGTATCTCCGTCGTGCGACGTTATAGTTGCGAAAAAAGAAGAATTGAACGAAAGCAGCGGCAACATGCTTATTGATTCTGATACTGATCCTCATCCTACAGAAGTCGAGCATGAAAATGCGGTACAAACACTCCAATTTGATCAAGATCCTCTGGAGATTAGAGACGGTAGCACGCTTTACGTCATGCCCATTCTTATCACTTAA
Protein Sequence: MDSNETNRDLLENVSITDVGGSQYMLQRMSVDNHHLLNNELLQHHSGLVVDLGGGDFIPVNYTSDDLLPQELTEEDRNLAAALVAVQFNQQQKQQHNQQDSTVIINTSLASLVNQNDLDKVTANAINSNYLHIVGPDGQGLYIEEKGPPLPKLIDSRFQTTNQEDSNRTTQKQDAKSEEENSQKESDSEIKNDNRSSKKSLPHKKRISRKLKKAPSSGKNKAQKCTLCEQVFSNNEELSAHQTLCRTTITPVPSHLFNCQLCSATFYNQLSFFEHLKAHYEPTQNNQLVVPTSSTTNNVQSSVSSSVLNDPTATSVACEDPPVGNYIEEKAVVKTELEQKEVLLSSLLNLNCLQCNKTFKRQKAYEAHIRDVHNKVELADFSESEDLMDGIDVNVDDPGALSDDESKNWIKYKDEDLYQAEADLRELEAEEHVCQNCKQPFPIRAILLQHLVTCKPPEGQQVTEPTKQTWNAGGGKKRNRKKQQGDLSCPECDRVFMYRNSLLYHMRSHTGDRPHQCDQCGKKFFAASALKVHLRLHSGVKPYKCDHCGRYFRQWGDLKYHCISLHSDQKNYQCEYCGKEFARKYSLVVHRRIHTGEKNYRCEFCEKTFRASSYLNNHRRIHTGEKPHACEICGKPFRVRSDMKRHLKTHRRRRQSRSTVSPSCDVIVAKKEELNESSGNMLIDSDTDPHPTEVEHENAVQTLQFDQDPLEIRDGSTLYVMPILIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032271;
90% Identity: iTF_00032271;
80% Identity: -