Amal024093.2
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055661.1:9027674-9029897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.023 2.2 9.9 0.2 3 20 8 26 6 28 0.86 2 15 0.0079 0.78 11.3 0.1 2 20 34 52 33 54 0.94 3 15 1.4 1.4e+02 4.3 0.5 1 12 104 115 104 124 0.88 4 15 7.8 7.7e+02 1.9 3.9 1 20 244 263 244 265 0.89 5 15 0.00041 0.04 15.4 3.6 2 23 268 289 268 289 0.98 6 15 0.00031 0.03 15.8 1.5 1 23 305 327 305 327 0.98 7 15 1.4 1.4e+02 4.3 0.6 1 23 358 379 358 379 0.88 8 15 2.6e-06 0.00026 22.3 1.2 1 23 385 407 385 407 0.98 9 15 0.011 1 10.9 0.6 1 21 413 433 413 434 0.92 10 15 0.00018 0.017 16.5 1.6 1 23 441 463 441 463 0.98 11 15 1e-05 0.00098 20.5 3.3 1 23 469 491 469 491 0.97 12 15 0.00022 0.022 16.2 6.4 1 23 497 519 497 519 0.98 13 15 2.8e-05 0.0028 19.0 0.2 1 23 525 547 525 547 0.98 14 15 4.1e-05 0.004 18.5 0.2 1 23 551 573 551 573 0.98 15 15 0.00041 0.04 15.4 0.1 1 23 581 604 581 604 0.95
Sequence Information
- Coding Sequence
- ATGTGCGGAGTGCAACTAGAATGCCCATTATGTTGTAAAGAAGTATTTTCAACTTATAGTGCtcttaaaaatcatttaattgaacTATCGCAAAAATTAAAGTGCGGAGTGTGTGGATTacatttcgaaaaactttcaaattttgctGATCATATTGGAAGTgagtgtaaattaaattataagttagaaaatgtagAATTTTGTGAATTACAAGAGGAACTTAATGATAAAGCAACAAATTCTGATGAAGGAGTCTCAAGTGGTGAAAACGAGGTTAACAAACAGGACAGTGATTCCAGTGAAGAGTTGTACCATTGCTCTACgtgtgatataaattttacttctgttgaaCAGCATATTCAGGACTACCACAAAGATCATGAAGTCTTTATTGAGgCAACAAATGTCATTGAGTTGGACAAACCATTAGATAGTGACAGCCATGCCGCAGTTATTTCTGAAGAAGCAATTTTAGGTCTTACAGGCTTGGATGATGACATTGAATCCCAAATTGAAAGTTCTACGATTAAAAAGAACAGCACATATGATGTAAAAGAAAGAGTCTATGTGGATAAAAATGGTCGTGAATATACCAGAAAGATGGTAAAGATTGAAAAATTCTGGCATAAAGATGGAAAATCAAGGGACCAGCATTCTCCTATTGTTGAACAGGTGTGTACAGTTAATAAAGACAGTGAAGGCAACAGGCAACTAAAATATGTACATGTGTATCAATGTCCTTCGTGtcccttatattttttttcctcaaAGGGCTATGATTCCCACAAATGCCACAGTGAGAAATGTCGCTATTGTGATTCCTATTTTTCAAACTCCAAATCGCTATGTGCTCACATGAAAATTCACAAGGAGGACAGCAAACACGGTGTTGATATAGAAGTGACAGGAGTATTCATTTGTAATGTGTGCAACACTGAGTTTCAAAGTTTCAAGTCACTCAAACTTCATTTACGTATGCACGATCCCATTAAATTGAAGGAGATCGAGCCCCCCGTGTCGTATGGTGTTTGCGGTGAGACCCAAGGACTTTCGCACTCTCCTAGGGAAACTTTTGTGTGTAACGTGTGCAACAACACATATGACAAGGAGTATGAAGAAGTTCACAGACGATCGCACAGCCTCGACGAGAATTTTAACTGCGAAATATGCAATAAGAAATTTTACACCCGCGAAAATTTAACGATGCACGCCAGGGTTCATGTGGACGTCAAAAAGTTTTCTTGTTCGTATTGCAAAAAAGCATTTTTGACCTACGAAAGTCTGCAGGAGCATGTGACGACCCAGTGCCAGAAGAGGCAGTACGAGTGCCAGTTTTGCGGTCGAAGGTTTGCACGACCACACGAAAAAGTCAAACACGAAAGGATACATACGGGGGAAAAACCGCATATTTGTCAAATTTGCGGAAAGGCGTTCAGGGTTAGCTACTGTCTTACACTTCATTTAAGGACTCACTCTGgTACTAGACCGTACCAGTGTCCTCACTGCGGTAAACGTTTCAAGGCCCACAGCGTCTACAATCATCATTTACTGACTCATTCGGATGAACGAAAGTACAAATGTCCTTATTGTCCAAAAGCCTTCAAAACCGGAGTACAACTGGCCGGTCACAAGAACAGTCACACGAAGCCCTTCACCTGTACTGAATGCAACAGACCCTTTGCATCCCTGTACGCTGTACGAATCCATATGGACACTCATCAacgtcaaaataatttaaagcacATTTGTTGGGTTTGTGGAGCTTCCTATGCAAGAGCATTTGCTCTCAGAGATCATATAAGGGAGCAGCACCAATGTGGAGACGATTTGGGGAATCTTAACGAGGAACAGGATGATGGAACTACTGAAGTGGTAGAGAATACAGAAGAACAAATTCCATCGGACGTTATTAATGAACAAGAAATTTTGATCGATGAATGA
- Protein Sequence
- MCGVQLECPLCCKEVFSTYSALKNHLIELSQKLKCGVCGLHFEKLSNFADHIGSECKLNYKLENVEFCELQEELNDKATNSDEGVSSGENEVNKQDSDSSEELYHCSTCDINFTSVEQHIQDYHKDHEVFIEATNVIELDKPLDSDSHAAVISEEAILGLTGLDDDIESQIESSTIKKNSTYDVKERVYVDKNGREYTRKMVKIEKFWHKDGKSRDQHSPIVEQVCTVNKDSEGNRQLKYVHVYQCPSCPLYFFSSKGYDSHKCHSEKCRYCDSYFSNSKSLCAHMKIHKEDSKHGVDIEVTGVFICNVCNTEFQSFKSLKLHLRMHDPIKLKEIEPPVSYGVCGETQGLSHSPRETFVCNVCNNTYDKEYEEVHRRSHSLDENFNCEICNKKFYTRENLTMHARVHVDVKKFSCSYCKKAFLTYESLQEHVTTQCQKRQYECQFCGRRFARPHEKVKHERIHTGEKPHICQICGKAFRVSYCLTLHLRTHSGTRPYQCPHCGKRFKAHSVYNHHLLTHSDERKYKCPYCPKAFKTGVQLAGHKNSHTKPFTCTECNRPFASLYAVRIHMDTHQRQNNLKHICWVCGASYARAFALRDHIREQHQCGDDLGNLNEEQDDGTTEVVENTEEQIPSDVINEQEILIDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030446;
- 90% Identity
- -
- 80% Identity
- -