Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998122.1:31672347-31674665[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.39 27 5.7 0.2 3 20 8 26 6 28 0.85

2 14 0.0061 0.43 11.4 0.2 2 20 34 52 33 53 0.95

3 14 3 2.1e+02 2.9 0.1 1 12 128 139 128 145 0.89

4 14 0.00077 0.054 14.2 3.4 2 23 292 313 292 313 0.98

5 14 0.0024 0.17 12.7 2.1 1 23 332 354 332 354 0.98

6 14 3.6 2.5e+02 2.7 0.5 1 23 385 406 385 406 0.84

7 14 2.2e-06 0.00015 22.2 1.2 1 23 412 434 412 434 0.98

8 14 0.04 2.8 8.8 1.3 1 21 440 460 440 461 0.91

9 14 0.00015 0.01 16.5 1.6 1 23 468 490 468 490 0.98

10 14 1.4e-06 9.9e-05 22.8 3.5 1 23 496 518 496 518 0.98

11 14 0.00019 0.013 16.2 6.4 1 23 524 546 524 546 0.98

12 14 2.4e-05 0.0017 19.0 0.2 1 23 552 574 552 574 0.98

13 14 3.5e-05 0.0024 18.5 0.2 1 23 578 600 578 600 0.98

14 14 0.00013 0.009 16.7 0.8 1 23 608 631 608 632 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.39	27	5.7	0.2	3	20	8	26	6	28	0.85
2	14	0.0061	0.43	11.4	0.2	2	20	34	52	33	53	0.95
3	14	3	2.1e+02	2.9	0.1	1	12	128	139	128	145	0.89
4	14	0.00077	0.054	14.2	3.4	2	23	292	313	292	313	0.98
5	14	0.0024	0.17	12.7	2.1	1	23	332	354	332	354	0.98
6	14	3.6	2.5e+02	2.7	0.5	1	23	385	406	385	406	0.84
7	14	2.2e-06	0.00015	22.2	1.2	1	23	412	434	412	434	0.98
8	14	0.04	2.8	8.8	1.3	1	21	440	460	440	461	0.91
9	14	0.00015	0.01	16.5	1.6	1	23	468	490	468	490	0.98
10	14	1.4e-06	9.9e-05	22.8	3.5	1	23	496	518	496	518	0.98
11	14	0.00019	0.013	16.2	6.4	1	23	524	546	524	546	0.98
12	14	2.4e-05	0.0017	19.0	0.2	1	23	552	574	552	574	0.98
13	14	3.5e-05	0.0024	18.5	0.2	1	23	578	600	578	600	0.98
14	14	0.00013	0.009	16.7	0.8	1	23	608	631	608	632	0.96

Sequence Information

Coding Sequence: ATGTGCGGAGTGCAACTAGAATGCCCTTTATGTTGTAACGCAGTATTTTCAACTTATAATGCTCTTAAAGATCATTTAATTCAAATATCGCAAaagttaaaatgtaaaatatgtgGATTACATTTCGAAAAACTTACTAATTTTGCTGATCATATTGGAGGTGGATGTAAATTAAACTGTAAGTCAGAAAGTGCAGAGTTTTGTGAATTGCAAGAGGAACTTGTagataaagaaataaattttgatcAGAAAGTATCAAGTGGTACTAATACATTAATTAGAATGGTATTAGACTCTTTTAATGGCAAAGTATTTGTAGGTGAACCTGAGATTAGCAAGCAAGGTAGTAACTCTAATGAAGAGTTGAAAAGTGATGAATTGTACCATTGTTCTACatgtgatataaattttatttccgTTGAAGAGCATATTCAGGAATATCATAAGGATCATGAAGTCTATATTGAGgcACCAAGTGTCTTTGAATTAGATAAGTCTTTAGATAGCGATAATCATACTACAATTGTGTGTGAAGAATCAATTTTGGGTCTTACTGGACTAGATGATGATATTGAATCCCAAATTCAATGTtccacaattaaaaaaaatagtgcaAATGATATTAAAGAAGGAGTTTATGTAGACAAAAATGGTCGTGAATATACCAGAAAGATGGTAAAGATTGAAAAATTTTGGAACAAGGAAGGAAAATCAAAAGAACAACATTCTCCAATTATTGAACAGGTCTGTACAGTTAATAAAGACAGTGACGGCAAGAGACAACTAAAGTATGTATTTGTATATCAATGTCCTTCATGTTCCTTGTACTTTTTTTCCTCAAAGGGCTATGATTCCCATAAATGCCACAGTGAGAAATGTCAGTATTGTGATTCCTATTTTTCAAGCACTAAATCATTATGTGCACATATGAAAGTTCACAAGGCAGACAACAAACAAGCAACAGAAGGCACTGATGTAGAAATATCGGGTTCATTTGTTTGTAATGTGTGCAAAACAGAGTTTCAAAGCTTTAAATCACTCAAATTACATTCACGGATGCACGATCCAGTTAAATTGAAAGAGATCGAACCTCCGGTGTCGTACGGTGTTTGTGGTGAGACCCAAGATCTTTCACAGTCTCCTAGAGAAACTTTTGTGTGTAATGTATGCAGTAACACTTATGACAAAGAATATGAAGAAGTGCACACACGATCGCACAGTCTCGATGAGAATTTCAACTGCGAAATATGCAATAAGAAATTTTACACTCGTGAAAACTTGACGATGCACGCCAGAGTCCATGTGGGTGTCAAAAAGTTTTCTTGTTCGTACTGCAAAAAAGCATTTTTGACTTACGAGAGTTTACACGAGCATGTGACGACCCAGTGCCAGAAGAGGCAGTACGAGTGTCAGTTTTGCGGTCGGAGGTTCGCACGACCTCACGAAAAAGTTAAACATGAAAGAATACATACGGGGGAAAAACCGCACGTTTGTCAAATTTGCGGAAAGGCTTTCAGAGTTAGCTACTGCCTTACACTTCATATGCGGACTCACTCAGGTACTAGACCATACCAATGCCCCCACTGTGGTAAACGTTTCAAGGCCCACAGCGTCTACAATCACCATTTACTGACTCATTCAGATGAACGAAAATACAAGTGTCCTTATTGTCCGAAAGCTTTCAAAACTGGAGTACAATTGGCTGGTCATAAGAACAGTCATACGAAGCCCTTCACTTGCACCGAATGTAACAGGCCATTTGCGTCTCTGTACGCAGTACGTATTCATATGGACACTCATCAACGTCAAAACAACTTGAAGCACAAATGTTGGGTGTGTGGGGCGTCGTATGCGAGGGCGTTTGCCCTCAGAGATCATATAAGGGAGCAACACCATTGTGGAGAAGAAATAGTTGATCTTAACGAGGAGTTGACAGAACAGGATGAAGGAAATGAGGTAGTAGAACAAGAAATTTTGATGGAAATGGAAGGGAATGGACAGGACGACGGGACTTAA
Protein Sequence: MCGVQLECPLCCNAVFSTYNALKDHLIQISQKLKCKICGLHFEKLTNFADHIGGGCKLNCKSESAEFCELQEELVDKEINFDQKVSSGTNTLIRMVLDSFNGKVFVGEPEISKQGSNSNEELKSDELYHCSTCDINFISVEEHIQEYHKDHEVYIEAPSVFELDKSLDSDNHTTIVCEESILGLTGLDDDIESQIQCSTIKKNSANDIKEGVYVDKNGREYTRKMVKIEKFWNKEGKSKEQHSPIIEQVCTVNKDSDGKRQLKYVFVYQCPSCSLYFFSSKGYDSHKCHSEKCQYCDSYFSSTKSLCAHMKVHKADNKQATEGTDVEISGSFVCNVCKTEFQSFKSLKLHSRMHDPVKLKEIEPPVSYGVCGETQDLSQSPRETFVCNVCSNTYDKEYEEVHTRSHSLDENFNCEICNKKFYTRENLTMHARVHVGVKKFSCSYCKKAFLTYESLHEHVTTQCQKRQYECQFCGRRFARPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHMRTHSGTRPYQCPHCGKRFKAHSVYNHHLLTHSDERKYKCPYCPKAFKTGVQLAGHKNSHTKPFTCTECNRPFASLYAVRIHMDTHQRQNNLKHKCWVCGASYARAFALRDHIREQHHCGEEIVDLNEELTEQDEGNEVVEQEILMEMEGNGQDDGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032263;
90% Identity: -
80% Identity: -