Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055658.1:21861654-21865023[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.064 6.2 8.5 2.7 2 21 408 427 407 431 0.89

2 11 1.2e-05 0.0011 20.3 3.3 1 23 438 459 438 459 0.98

3 11 2.1e-05 0.0021 19.4 1.0 1 23 465 487 465 487 0.98

4 11 2.1e-05 0.002 19.5 1.2 1 23 493 515 493 515 0.97

5 11 2.8e-05 0.0027 19.1 1.3 1 23 526 549 526 549 0.97

6 11 7.2e-05 0.007 17.8 4.3 1 23 566 588 566 588 0.98

7 11 4.5e-05 0.0044 18.4 0.1 1 23 593 615 593 615 0.96

8 11 7e-06 0.00068 21.0 1.0 1 23 621 643 621 643 0.99

9 11 0.00024 0.023 16.1 7.7 1 23 649 671 649 671 0.98

10 11 6.5e-07 6.4e-05 24.2 1.9 1 23 677 699 677 699 0.99

11 11 0.00097 0.095 14.2 1.3 1 23 705 728 705 728 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.064	6.2	8.5	2.7	2	21	408	427	407	431	0.89
2	11	1.2e-05	0.0011	20.3	3.3	1	23	438	459	438	459	0.98
3	11	2.1e-05	0.0021	19.4	1.0	1	23	465	487	465	487	0.98
4	11	2.1e-05	0.002	19.5	1.2	1	23	493	515	493	515	0.97
5	11	2.8e-05	0.0027	19.1	1.3	1	23	526	549	526	549	0.97
6	11	7.2e-05	0.007	17.8	4.3	1	23	566	588	566	588	0.98
7	11	4.5e-05	0.0044	18.4	0.1	1	23	593	615	593	615	0.96
8	11	7e-06	0.00068	21.0	1.0	1	23	621	643	621	643	0.99
9	11	0.00024	0.023	16.1	7.7	1	23	649	671	649	671	0.98
10	11	6.5e-07	6.4e-05	24.2	1.9	1	23	677	699	677	699	0.99
11	11	0.00097	0.095	14.2	1.3	1	23	705	728	705	728	0.95

Sequence Information

Coding Sequence: aTGGTTTCTAGttgtgttataaaaaattgcccTTCAGTATGGATTCCTAATTCGGGCATTTCGTTTTTTAAaTTTCCTTTAAGTAATGTAGATTTGTTAGAAAAATGGATGAAAGTTATACCAAAAGACGTCCTTCGTAAACCTCCAACTGTACATTCAAGAATTTGCAGTAGACATTTTTTgcctcaatttttattaccatTAGGTAGTCCAGAGCATTCGCTTAAGAAAAGACTGAGGCAAGATGCTATTCCGTCTATATTTTACATTGATGGAGAATtgGTTGTTTCTGACATTACATATGAagattttctacaaaatgATAGAACAACGGAAGCCATAGAACAGGAAAGATTTATGTGGGATGTTTCTGTTCAGACAATtccaattctttttaaatcacCTGCTGAAGAACAGTTGAGAAAAGAAGTAAAGACATTGAAATATCGTTTATATCGTCAAGAGTTAAAAATTAACTCCATGAAGGATCTCCTTGTTACATTAGGAttagaaaagaatTCAGACATAAATGAGGAGTTCACAGCTGTACAGCAATCTTTAGAAAAGCATATGATGAatgatttaaattgtttaaataatttacagaaaCAAGATTTAAACACTGTTTGTAGAACTTGTCTTTTGTCTGGTAAAactaattctattttaaatttatcatttgATCAGGAATATGTAAAAAACTTGTTAGAACAATATTTCTCTATAAAGGTAGaacaaaatgataaatttttaggCATATGCCTCTTGTGCTATCTTGAAATTGTCAGAACTTACATTTTTCATAAGAGATGTAAAAAATCAACTGAAATTATGGAATCATTAATTGATGcaaataattcaattcatGAATTTTCCAAAGATTTTCACGAAGATGATTCTAAACTGTGCATGTCACCTATTGATTGTGACGAACATTTTAGCGAAATTAGCTCtcaagaaaatcaaaatgacacgaattgtaaagaaaattgcattaaaagtGAAGATAATAGTTTATTCACAGTTGAAGACAAAGCTGACATACAGAAAACTAACAATTCTGAAGAAACATTATTCACAGATTCAAATACtaaatctgaaaaaaaatatgtatctgaAGATGAAGGCAAACAAAAAGAAGTAACTAATGAATTATTGGAccagaaagaagaaaaatgtgAGCGTTCCACGAAAAAAAGGAGAATAAATaagGCAATACTTCATTGTAACCATTGCAATGTAACATTCAATTCTTATATAGAATATAGAAACCATCGCCTAGAAGTGAAACACCCAAAGCAAAGGAAACATTATCCATGTAATGTGTGCAATAAACATTTCACATCTTCAAAATTAAAGCAGCACATGCGAATTCACACTAATGAACAACCATATGAATGCAATATTTGTTTGAAACGTTTTAATCTCAAAGGAAATTTAAATAGGCATAAGATGATTCACACAGGGGAAAGACCCCATATTTGTGAACTGTGTGGAAAAGGTTTTATTCAATCAACAACCCTCAATACACACAAAAGGGTCCACTTTATGCGCGACGCCTCTTCAATATCATGTTTTAGTTGTAATATTTGCGGTAGAATGTTCAAACGCATCGGACcatataataaacatttacggAAAAAACATTCCGAAGAGAAAtttgaagaagaaataaagaagGAGGAGCCCCGCGATTTCGTATGCACTGTTTGTAATAGtgcttttaaacaaaaacatcATTTGAATGCCCATAAACGTATTCACGGTGAAAGGAAGTATTTGTGTAACGGATGCGGAAAAAGTTATGCTACCAAACCAGCTTTGGATTCACATCTAAAGGTGCACACTGGAGAGAAGCCTTATAAGTGTTTGGTTTGTGGCAAGTCCTTTGCTCATATTTCAACATTTGATGCACACATGCTCACACATACTGGTGAAAAGCCGCATGTGTGTAAATTTTGTTCGAAAAGATTCACTCAGTTAACACATCTAACGTATCATCTGAGAACGCATAGCGGAGAACGTCCTTATTCGTGTACCTTTTGTGGAAAATGTTTCGCCCTAAAGGGCAATTTAACAGTGCACATAAGAATGCACAccggagaAACCCCGTACATTTGTTCCGTATGCAACAGAGGATTTTATGATTCAAACAGTATGAAGAAGCATAAAAAAGCCCAGCATGGTCTCTTGCCCAAAGAACCGGAGAAAACACTAAAAACTAATTGTGAGGAGGATAATAGTGGTACCGTAGAAGTTGTTACTAGTTCCGGAGATATAATTAATACGAATATTGACGATGTTATTGTAGAATTTGGAACTTCCTAA
Protein Sequence: MVSSCVIKNCPSVWIPNSGISFFKFPLSNVDLLEKWMKVIPKDVLRKPPTVHSRICSRHFLPQFLLPLGSPEHSLKKRLRQDAIPSIFYIDGELVVSDITYEDFLQNDRTTEAIEQERFMWDVSVQTIPILFKSPAEEQLRKEVKTLKYRLYRQELKINSMKDLLVTLGLEKNSDINEEFTAVQQSLEKHMMNDLNCLNNLQKQDLNTVCRTCLLSGKTNSILNLSFDQEYVKNLLEQYFSIKVEQNDKFLGICLLCYLEIVRTYIFHKRCKKSTEIMESLIDANNSIHEFSKDFHEDDSKLCMSPIDCDEHFSEISSQENQNDTNCKENCIKSEDNSLFTVEDKADIQKTNNSEETLFTDSNTKSEKKYVSEDEGKQKEVTNELLDQKEEKCERSTKKRRINKAILHCNHCNVTFNSYIEYRNHRLEVKHPKQRKHYPCNVCNKHFTSSKLKQHMRIHTNEQPYECNICLKRFNLKGNLNRHKMIHTGERPHICELCGKGFIQSTTLNTHKRVHFMRDASSISCFSCNICGRMFKRIGPYNKHLRKKHSEEKFEEEIKKEEPRDFVCTVCNSAFKQKHHLNAHKRIHGERKYLCNGCGKSYATKPALDSHLKVHTGEKPYKCLVCGKSFAHISTFDAHMLTHTGEKPHVCKFCSKRFTQLTHLTYHLRTHSGERPYSCTFCGKCFALKGNLTVHIRMHTGETPYICSVCNRGFYDSNSMKKHKKAQHGLLPKEPEKTLKTNCEEDNSGTVEVVTSSGDIINTNIDDVIVEFGTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00031288;
90% Identity: iTF_00032038;
80% Identity: iTF_00032038;