Basic Information

Insect: Agrilus cyanescens
Gene Symbol: -
Assembly: GCA_947389935.1
Location: OX376707.1:9195060-9198756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.9 1.5e+03 1.5 1.2 3 19 407 423 405 423 0.90

2 11 7e-07 0.00017 23.2 1.3 1 23 436 457 436 457 0.98

3 11 1.1e-05 0.0028 19.4 1.0 1 23 463 485 463 485 0.98

4 11 1.2e-05 0.0029 19.4 1.2 1 23 491 513 491 513 0.97

5 11 1.2e-05 0.0029 19.4 1.4 1 23 522 545 522 545 0.98

6 11 3.6e-06 0.00088 21.0 3.0 1 23 562 584 562 584 0.98

7 11 2.4e-05 0.0059 18.4 0.1 1 23 589 611 589 611 0.96

8 11 7.9e-06 0.0019 19.9 1.8 1 23 617 639 617 639 0.99

9 11 5.8e-05 0.014 17.2 7.1 1 23 645 667 645 667 0.97

10 11 1.7e-06 0.00043 22.0 2.7 1 23 673 695 673 695 0.98

11 11 0.00013 0.032 16.1 1.2 1 23 701 724 701 724 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.9	1.5e+03	1.5	1.2	3	19	407	423	405	423	0.90
2	11	7e-07	0.00017	23.2	1.3	1	23	436	457	436	457	0.98
3	11	1.1e-05	0.0028	19.4	1.0	1	23	463	485	463	485	0.98
4	11	1.2e-05	0.0029	19.4	1.2	1	23	491	513	491	513	0.97
5	11	1.2e-05	0.0029	19.4	1.4	1	23	522	545	522	545	0.98
6	11	3.6e-06	0.00088	21.0	3.0	1	23	562	584	562	584	0.98
7	11	2.4e-05	0.0059	18.4	0.1	1	23	589	611	589	611	0.96
8	11	7.9e-06	0.0019	19.9	1.8	1	23	617	639	617	639	0.99
9	11	5.8e-05	0.014	17.2	7.1	1	23	645	667	645	667	0.97
10	11	1.7e-06	0.00043	22.0	2.7	1	23	673	695	673	695	0.98
11	11	0.00013	0.032	16.1	1.2	1	23	701	724	701	724	0.96

Sequence Information

Coding Sequence: ATGGTGTCTAGTTGTGCTATAAAAAAATGTTCTTCAGTGTGGATTCCCAATTCCGGAATATCGTTTTTTAAGTTTCCTTTAAGTAACGCAGATTTGTTAGAAAAATGGTTAAAAGTTATACCGAAAGGAATTCTACGTAAACCGCCGAATGTACATTCTCGTATTTGCAGTAGACATTTTTTACCTCAATTTATATTACCGTTGGGTAATTCAGAACATTCGGTTAAGAAAAGGCTAAAGCAAGATGCTATCCCGTCTATATTTTTCATTGATGGTGAACTTATAGTTTGTGATATTGCATGTGAAGATTCTTTACAAAACGATGTATCTACAGGTAGTGCAGAAGTCACAGAACAGGGAAGATCCATGTGGGATGTTTCAGTTCAGACAACACCAATTCTTTTTAAATCACCTGCTGAAGAACAGCTGAGAAAAGAAGTGAAGACACTGAAGTATCGTTTATACCGCCAAGAGTTAAAAATTAACTCTATGAAGGAGCTTCTTATTACATTAGGATTGGAAAAGAGCTTAGGCATGAAAGAGGAATTTACAGCAGCCCAACAATCTCTAGAAAGGCACATGAATAAAGATTTAAATTACTCTAAAAATTTACAGAAACAAGATCTGAACACTGCTTGCCGAACTTGTCTTTTGTCTGGTAAAACTAAATCTATTTTTAACTTAACTTTTGACCAGAAAAATGTAAAAGATTTGTTACAACAATATTTTTCTATTAAGATAGAGGAAACGGATAAAATCTTAAGTATTTGCCTCTTATGCTACTTAGAAATTGTTAGAGCTTACATTTTTCATAAAAGATGTAAAAAGTCAAGTGAAATTATGGAATCATTAGTTGATGTAAACAATTCAACTCATGAATTTTCAAAGGATTTTCTTGAGGATGCGTGCATGTCAACTGTTGATAGTGATGAACATTTTAGCGAAATTAGTTCTCAAGATAATCAAACCGACACAAATTGTGAGGAAAGTCACATTAAAAGTGAAGACATCGATTTATGTACATTTGAAATCAAAACTGACGTACAAAAAACTGACTGCTTTAAAGAAAACTTATTCACAGATTTAAATACTAAATCTGAAAAAAATTATTTATCTGAAGATGAAGTTAAAGATGTAACTAAGTCATTATTGGATGAAAAAGAAGAAAAACGTGAACGACCAAGGAAACGTAGACGAATGAAAAAGGCTATACTTCATTGCATTCATTGTAATGTGACATTCGATTCTTACATAGAATATAGGAAACATTGTGTAGagatgaagcacccaaagcaaaggaaatattatccgtgtaatgtgtgtgataaacgttttacctcttcaaaattgaaacaacatatgcgaattcatactaaggaacagccttatgaatgcaatatctgtttgaaacgttttaatctcaaaggaaatttaaataggcataaaatgattcacacgggggaaaggccgcatatttgtgaactatgtggaaaagGTTTTATTCAATCAACTACTCTCAATACTCACAAAAGGATCCATTTTATGCGCGACCCCTCATCAATGTATTATTGTAATATTTGCGGTAGAATGTTTAAACGTATCGGTCCATATAACAAACATTTACGAAGAAAACACTCCGAAGAAAAATTTGAAGAAGAAATTAAAGAGGAGGGACCTCGCGATTATGTATGTGAAGTTTGTAATAGCGCCTTCAAACAAAAGCATCACTTGAATGCCCACCAACGAATTCATGGTGAAAGAAAGTATTTGTGCAATGGTTGTGGTAAAAGTTATGCCACTAAACCAGCTTTGGATTCTCATCTAAAGGTgcatactggagagaaaccatataaatgtttggtttgtggcaagtcattcgctcacatttcaacgttcgatactcacatgctcacgcacactggcgagaagcctcacatgtgtaaattttgtccgaaaagatttactcagttaacacacttaacctatcatctgagaacacacagcggagaacgtccgtattcgtgtactttctgcggaaaatgtttcgctctaaaaggaaatttaacagttcacacgagaatgcatacggGGGAGACGCCGTACGTTTGTTCCGTATGTAATAGGGGATTTTACGATTCCAACAGTATGAAAAAGCATAAAAGAGCTCAGCATGGATTCTTGCCTAAAGAAACGGAAAAGACTTCGAAAGATAGTACTACTCGTGAAGAGGATGTTAGTGGAAGTGTGGAAGTTGTCATTAGTTCGGGAGATGTAATTAATACCAATATTGACGATGTTATTGACGAATTCGGAAATTCATAA
Protein Sequence: MVSSCAIKKCSSVWIPNSGISFFKFPLSNADLLEKWLKVIPKGILRKPPNVHSRICSRHFLPQFILPLGNSEHSVKKRLKQDAIPSIFFIDGELIVCDIACEDSLQNDVSTGSAEVTEQGRSMWDVSVQTTPILFKSPAEEQLRKEVKTLKYRLYRQELKINSMKELLITLGLEKSLGMKEEFTAAQQSLERHMNKDLNYSKNLQKQDLNTACRTCLLSGKTKSIFNLTFDQKNVKDLLQQYFSIKIEETDKILSICLLCYLEIVRAYIFHKRCKKSSEIMESLVDVNNSTHEFSKDFLEDACMSTVDSDEHFSEISSQDNQTDTNCEESHIKSEDIDLCTFEIKTDVQKTDCFKENLFTDLNTKSEKNYLSEDEVKDVTKSLLDEKEEKRERPRKRRRMKKAILHCIHCNVTFDSYIEYRKHCVEMKHPKQRKYYPCNVCDKRFTSSKLKQHMRIHTKEQPYECNICLKRFNLKGNLNRHKMIHTGERPHICELCGKGFIQSTTLNTHKRIHFMRDPSSMYYCNICGRMFKRIGPYNKHLRRKHSEEKFEEEIKEEGPRDYVCEVCNSAFKQKHHLNAHQRIHGERKYLCNGCGKSYATKPALDSHLKVHTGEKPYKCLVCGKSFAHISTFDTHMLTHTGEKPHMCKFCPKRFTQLTHLTYHLRTHSGERPYSCTFCGKCFALKGNLTVHTRMHTGETPYVCSVCNRGFYDSNSMKKHKRAQHGFLPKETEKTSKDSTTREEDVSGSVEVVISSGDVINTNIDDVIDEFGNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00031116; iTF_00030275; iTF_00032258; iTF_00032038; iTF_00030421;
90% Identity: iTF_00031116;
80% Identity: iTF_00031116;