Amal011472.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055657.1:1428603-1430159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.4 39 6.0 0.2 3 21 143 161 141 162 0.92 2 12 0.00016 0.016 16.7 2.0 1 23 169 191 169 191 0.96 3 12 3.6e-06 0.00035 21.9 2.8 1 23 197 219 197 219 0.99 4 12 5.5e-06 0.00054 21.3 2.3 1 23 225 247 225 247 0.98 5 12 0.00016 0.016 16.7 3.5 1 23 253 275 253 275 0.98 6 12 0.00021 0.021 16.3 0.4 2 23 285 306 284 306 0.96 7 12 6.2e-07 6.1e-05 24.3 1.3 1 23 313 335 313 335 0.98 8 12 1.5e-07 1.5e-05 26.2 5.0 1 23 343 365 343 365 0.98 9 12 1.2e-05 0.0012 20.2 0.8 1 23 371 393 371 393 0.98 10 12 4.9e-05 0.0048 18.3 1.1 1 23 399 421 399 421 0.97 11 12 3.9e-05 0.0038 18.6 1.4 1 23 427 449 427 449 0.98 12 12 0.00011 0.011 17.2 1.7 3 23 457 478 455 478 0.97
Sequence Information
- Coding Sequence
- atggaAGTGGAGACCAAGCCTTTTGAAGAGGTTAAAAACGAGGGATCATCAGGTGGATCATTCAATTTTGTTCATGTAAACGTAAACGTGAAACAAGAACAACCTGAAGATACAGAATTTGAAAATGAACTTGGGGAAATTAATGTGAAAAAAGAAGTCGTCTCGGACGATGAAGACTCGTCCAGTGGAAGTTCAGATAGCAGTTCGAACAATGCTAGCAGTTTTCATACAGACAGCAACTCTAGTGAAGACTTCTTCGATAATAGTGTTAAGAATGAGGCAGGGCGTATTAAAAATAGTGACTACTTAGAAATCCAAAATATGAACAATTCCAGTAACAGTTTTGAAAATGCCATTGGACATATGATGGACAATGAAACTGAAAGTGAAAATGAGAATGAAAAAGAAGAACTACATTCCTTGGCTTGTAGAGTCTGTAAAGTCAAGTTCCCAGATGAAAATTCCTTGGATACACACAAGAAGAAACCTGCCCTTGAAAGATCTTTCGACTGCTGTGCATGTGGTAAAGCTTTTAGGGATATGACACAATTAAATGTTCACACAAGAAAACACACAGGTGAAAAGCCTTACCAATGCAGATTTTGTAGGAAACGTTTTTCAATTAATGGTAACCTCAATAAGCATATCCGTACTCACACAGGAGAAAAACGCTTTGAATGTGATGTGTGCAACAGAAAATTCACCCAATTTGCCCATCTGGAGGATCATCTAAAGACTCACTCCCTTGACCGTCCTTTTGTTTGTGACCACTGCGAGAGTTCCTTCAAGACCAAAGCAAGATTAAGGAAACATGTTAAATCTCATGATAGAGATGCTAAAAAGAAAGTGTTACCCTGTCCAATATGTTACAAATCATTCTGGAGTTCTAAGCAGCTCCTGAATCATATGACCCGTCATTCCGAAAGTACCAACCCTTTTATGTGCAAGATATGTGAAAAGGAATTCAAGGATTATCCCACCCTCACCAACCACATGAGGACTCACAAGAAAACTCATATTCGTCCATTCAAGTGCCACATGTGTGACAAAGCGTTTGCCTCCTCAAGTCATCTTCGACGGCACCTTAACTCCCACGCCGGCATTAAACCGTACATTTGTGAGTTATGTATGAGGGGATTCCCAAATTCACAAAACCTTAAACGACACATGAAAACACATACGGGGGAAAAACCACACGTGTGTGAAACATGCCAAAGAGCCTTCCTATCATTGGAAAACCTAAATAGACATATGCGAATACATACCGGGGAAAAACCTTACTCTTGTCCAATGTGCGATCGAAAGTTTGCGCACAGTACCACCGCGAAGGAGCATCTCAGAGTGCATACTGGTGAACAGCCCTTTGGATGCAGTACCTGTGGAAAAAGGTTTCGTATTAATAAAGAACTATACAAACACATCAGGAATAAACATCCGGAACATATGCATAAAAACATTTCGGACAAAGATGTCGAAAATCCCTTCTCGGCGCaggttttcattaaaaatgagaaaattgaCCCGGAATCAGACGATTCGAATggagaaattgtttaa
- Protein Sequence
- MEVETKPFEEVKNEGSSGGSFNFVHVNVNVKQEQPEDTEFENELGEINVKKEVVSDDEDSSSGSSDSSSNNASSFHTDSNSSEDFFDNSVKNEAGRIKNSDYLEIQNMNNSSNSFENAIGHMMDNETESENENEKEELHSLACRVCKVKFPDENSLDTHKKKPALERSFDCCACGKAFRDMTQLNVHTRKHTGEKPYQCRFCRKRFSINGNLNKHIRTHTGEKRFECDVCNRKFTQFAHLEDHLKTHSLDRPFVCDHCESSFKTKARLRKHVKSHDRDAKKKVLPCPICYKSFWSSKQLLNHMTRHSESTNPFMCKICEKEFKDYPTLTNHMRTHKKTHIRPFKCHMCDKAFASSSHLRRHLNSHAGIKPYICELCMRGFPNSQNLKRHMKTHTGEKPHVCETCQRAFLSLENLNRHMRIHTGEKPYSCPMCDRKFAHSTTAKEHLRVHTGEQPFGCSTCGKRFRINKELYKHIRNKHPEHMHKNISDKDVENPFSAQVFIKNEKIDPESDDSNGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030408; iTF_00031276;
- 90% Identity
- iTF_00030408; iTF_00031276;
- 80% Identity
- -