Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998119.1:38565406-38566977[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.42 29 5.6 1.7 2 21 146 165 145 166 0.92

2 12 0.00013 0.0093 16.6 2.0 1 23 173 195 173 195 0.96

3 12 2.9e-06 0.00021 21.8 2.8 1 23 201 223 201 223 0.99

4 12 4.5e-06 0.00032 21.3 2.3 1 23 229 251 229 251 0.98

5 12 7.4e-05 0.0052 17.4 3.5 1 23 257 279 257 279 0.98

6 12 0.00017 0.012 16.3 0.4 2 23 289 310 288 310 0.96

7 12 5.1e-07 3.6e-05 24.2 1.3 1 23 317 339 317 339 0.98

8 12 1.2e-07 8.7e-06 26.2 5.0 1 23 347 369 347 369 0.98

9 12 9.7e-06 0.00068 20.2 0.8 1 23 375 397 375 397 0.98

10 12 4e-05 0.0028 18.3 1.1 1 23 403 425 403 425 0.97

11 12 2.1e-05 0.0015 19.1 0.7 1 23 431 453 431 453 0.98

12 12 9.1e-05 0.0064 17.2 1.7 3 23 461 482 459 482 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.42	29	5.6	1.7	2	21	146	165	145	166	0.92
2	12	0.00013	0.0093	16.6	2.0	1	23	173	195	173	195	0.96
3	12	2.9e-06	0.00021	21.8	2.8	1	23	201	223	201	223	0.99
4	12	4.5e-06	0.00032	21.3	2.3	1	23	229	251	229	251	0.98
5	12	7.4e-05	0.0052	17.4	3.5	1	23	257	279	257	279	0.98
6	12	0.00017	0.012	16.3	0.4	2	23	289	310	288	310	0.96
7	12	5.1e-07	3.6e-05	24.2	1.3	1	23	317	339	317	339	0.98
8	12	1.2e-07	8.7e-06	26.2	5.0	1	23	347	369	347	369	0.98
9	12	9.7e-06	0.00068	20.2	0.8	1	23	375	397	375	397	0.98
10	12	4e-05	0.0028	18.3	1.1	1	23	403	425	403	425	0.97
11	12	2.1e-05	0.0015	19.1	0.7	1	23	431	453	431	453	0.98
12	12	9.1e-05	0.0064	17.2	1.7	3	23	461	482	459	482	0.97

Sequence Information

Coding Sequence: atgGAAGTGGAGACCAAGCCTTTTGAAGAGGTTAAAAATGAGGGATCATCAGGTGGATCTTTCAATTTTGTTCAAGTAAATGTAAACGTGAAACAAGAAGAACTTGAtgataaagaatttaaaaaagatttcgGAGAAATTAATGTGAAGAAGGAAGACATTTCGGACGATGAAGATTCATCCAGTGGAAGTTCTGAAAGCAGTTCAAACAATGCTAGCACTTTCCATACCGACAGCAACTCCAGTGAAGACTTTTTCGAGAACAGTGTCAAAAATGAGTCAGAgcgtattaaaaataatgcctCTGACAGTGACtacttagaaattcaaaatatgaACAATTCTAGTAACAGTTTTGAAAATGCCATTGGACATGTGATAGACAATGAAACTGAAAGTGAAAATGAGAATGAAAAAGAAGAACTTGATCCTTTGGTTTGTAGGGTGTGCAAAGTAAAATTCTCAGATGAAAATTGCTTGGATACCCATAAGAAAAAACCAGCCGTCGATAGATCTTTTGATTGCTGTGCATGTGGTAAAGCATTTAGGGATATGACACAATTAAATGTCCACACACGAAAGCACACAGGTGAAAAGCCTTACCAATGCAGATTTTGCAGGAAACGTTTTTCGATCAATGGTAATCTGAACAAGCATATCCGTACTCACACAGGAGAAAAGCGCTTTGAATGTGATGTATGCAATAGAAAGTTCACCCAATTTGCCCATCTTGAAGACCACCTAAAAACCCACTCCCTTGACCGTCCCTTTATTTGTGACCACTGTGAAAGTTCTTTCAAGACTAAGGCAAGATTACGGAAACACATTAAATCCCATGATAGAGATGCTAAAAAGAAAGTATTACCTTGTCCAATATGTTACAAATCATTCTGGAGTTCTAAACAACTCCTGAATCACATGACCCGTCATTCGGAAAGTACTAATCCTTTTATGTGCAAGATATGTGAAAAGGAATTCAAAGATTATCCTACCCTCACCAACCACATGCGAACCCACAAGAAAACTCATATTCGTCCATTCAAGTGTCACATGTGTGACAAAGCGTTTGCCTCTTCGAGTCATCTCCGACGACATCTCAACTCACATGCCGGTATCAAACCATATATTTGTGAGTTGTGTATGAGAGGATTCCCAAATTCGCAAAACCTCAAACGACACATGAAAACGCACACAGGAGAAAAACCACATGTGTGTGAAACATGCCAAAGAGCCTTCCTATCATTGGAAAATCTCAATAGACATATGCGAATACACACGGGAGAAAAACCTTATCCTTGTCCCATGTGCGATCGCAGATTTGCTCACAGTACCACCGCGAAAGAGCATCTCAGGGTGCACACCGGTGAACAGCCCTTCGGATGTAGTACCTGTGGAAAACGGTTTCGTATTAATAAAGAACTATACAAACACATCCGTAATAAACATCCGGAACACATGCATAAAAATATTTCGGATAAAGATGTCGAAAATCCCTTCTCGGCGCAGCTAGTTTTcatcaaaaatgaaaaaattgatCCGGAATCAGACGATTCGAATGGAGAAACTGTTTAA
Protein Sequence: MEVETKPFEEVKNEGSSGGSFNFVQVNVNVKQEELDDKEFKKDFGEINVKKEDISDDEDSSSGSSESSSNNASTFHTDSNSSEDFFENSVKNESERIKNNASDSDYLEIQNMNNSSNSFENAIGHVIDNETESENENEKEELDPLVCRVCKVKFSDENCLDTHKKKPAVDRSFDCCACGKAFRDMTQLNVHTRKHTGEKPYQCRFCRKRFSINGNLNKHIRTHTGEKRFECDVCNRKFTQFAHLEDHLKTHSLDRPFICDHCESSFKTKARLRKHIKSHDRDAKKKVLPCPICYKSFWSSKQLLNHMTRHSESTNPFMCKICEKEFKDYPTLTNHMRTHKKTHIRPFKCHMCDKAFASSSHLRRHLNSHAGIKPYICELCMRGFPNSQNLKRHMKTHTGEKPHVCETCQRAFLSLENLNRHMRIHTGEKPYPCPMCDRRFAHSTTAKEHLRVHTGEQPFGCSTCGKRFRINKELYKHIRNKHPEHMHKNISDKDVENPFSAQLVFIKNEKIDPESDDSNGETV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032243;
90% Identity: iTF_00032243;
80% Identity: -