Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055654.1:33067500-33069557[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.8e-05 0.0047 18.3 1.1 1 23 168 190 168 190 0.98

2 12 5.2e-06 0.0005 21.4 4.8 1 23 196 218 196 218 0.98

3 12 5.5e-08 5.4e-06 27.6 1.9 3 23 226 246 224 246 0.96

4 12 8.6e-05 0.0084 17.5 0.2 3 23 254 274 252 274 0.98

5 12 0.00025 0.025 16.0 2.1 1 23 280 302 280 302 0.96

6 12 9.1e-05 0.0089 17.5 1.3 1 23 308 330 308 330 0.98

7 12 1.3e-08 1.3e-06 29.5 0.7 1 23 336 358 336 358 0.97

8 12 1.3e-06 0.00013 23.2 0.9 1 23 364 386 364 386 0.99

9 12 6.7e-07 6.5e-05 24.2 1.5 1 23 392 414 392 414 0.99

10 12 9e-07 8.8e-05 23.8 0.5 1 23 420 442 420 442 0.99

11 12 1.2e-05 0.0012 20.2 0.3 1 23 448 470 448 470 0.98

12 12 3.5e-05 0.0035 18.7 1.1 1 23 476 498 476 499 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.8e-05	0.0047	18.3	1.1	1	23	168	190	168	190	0.98
2	12	5.2e-06	0.0005	21.4	4.8	1	23	196	218	196	218	0.98
3	12	5.5e-08	5.4e-06	27.6	1.9	3	23	226	246	224	246	0.96
4	12	8.6e-05	0.0084	17.5	0.2	3	23	254	274	252	274	0.98
5	12	0.00025	0.025	16.0	2.1	1	23	280	302	280	302	0.96
6	12	9.1e-05	0.0089	17.5	1.3	1	23	308	330	308	330	0.98
7	12	1.3e-08	1.3e-06	29.5	0.7	1	23	336	358	336	358	0.97
8	12	1.3e-06	0.00013	23.2	0.9	1	23	364	386	364	386	0.99
9	12	6.7e-07	6.5e-05	24.2	1.5	1	23	392	414	392	414	0.99
10	12	9e-07	8.8e-05	23.8	0.5	1	23	420	442	420	442	0.99
11	12	1.2e-05	0.0012	20.2	0.3	1	23	448	470	448	470	0.98
12	12	3.5e-05	0.0035	18.7	1.1	1	23	476	498	476	499	0.96

Sequence Information

Coding Sequence: ATGGGAACAAACgaatttaaaagtaacaaaatttgCAGAACTTGCTTAAGTGAAAACGACGAAATGAGGTCGTTATTCTCTTCAGATGAGACTTTTGAAAAGTGTGTAAAACtgtatgaaatattaatgagGATAACAACTTTTAATGTAATTGAAGCTGATGGATTACCTACTGAAGTGTGTTTGCAATGTGCTACGTTCTTATGCAAGGTCCATTcctttcaattaatgtgtgAAACTTCAGAGACCACTCTAAGACAACTACTAACCACATCAACACATGAAGACATAAAAAATGATCAACAAATTGAAGACAACATTAGTGATACAAAGCTAGATTTCAGTAGTGATTATGAAGATGTAAAGTCTGTAGATAGCAACTGTGAGATAATTTCAGGAGacGTTGATAAAGAAGGTATTTTGAAGGAGATCAATGTTGACCAACAAAAAGACAGTAACACAGAAAAGGAATCATGCATAGATGACACAGAGCAACCAATATTTCCTTGTGAAGAATGTACTGCCtgttttacaacaaaaatagatttaaaaGTTCACAATCGAATCCACTCAAAAGGTGACCGTCACACTTGCAAGGTCTGCAAGCAAAGTTTTGCCAGTGCTAGTACACTATGTCGTCATATGAAAGTTCATAACGGCATTAAACGCCATTTGTGTTCGGAATGTGGAAAGGGATTTTCGAGATCAGACGATCTTACACGACACTTAAGAACTCATACAGGGGAAAAACCTTTTGGCTGTAAAATATGTGGCAAAGCATATGCTCAATCGTTTAGACTTTTGGAACATATGCGCGCGCACGCAAATGAGAAGAGCTTTATTTGCTCATCTTGTGGGAAGGCATTTTCACGGTACACAAGCCTTGCTGCTCATTGCAAGACTCATACAGGATATAAAAGTCATGAATGCACAATTTGTGGTAAAAGGCTTTGTGGTTCAGGTTCTTTAGCTATGCACATGAAAATTCATACTGGGGTTAAAGACCATATTTGTCCTTATTGTGGTAAAGGATTTACTACTCCAAgcaatttaattatacataaaagAACTCACACCGgtgAACGTCCGTATGTGTGTAAGACATGCGGCAAAGGATTTCCCGATCCTTCCCGTCTAACAGTGCACCACAGGTCACATAGTGGAGAAAAACCGTACGTGTGTACCACATGCGGTCGAGGATGCGTTAGTTCGTCACAATTAAAGAAACACATTCGAATTCACACAGGAGAGAAACCTTATAGATGTAGTATGTGTTCAAAAGCATTCCCACGAAGTGAAGATCTCCGAATTCATGTGAAGACCCATACAGGAGAACGTAACTACATTTGTGTTGTGTGCAGGAAGGGATTCTACCAGGCATCAACTCTAAAGgTTCATTTGCGAATTCACACAGGGGAAAAACCGTACTCGTGCGCCTTATGCGACAGGACTTTTTCTCAAACAGGTCCTCTTTCTACACACATGAAAATTCATCATCCGTGCtcttcataa
Protein Sequence: MGTNEFKSNKICRTCLSENDEMRSLFSSDETFEKCVKLYEILMRITTFNVIEADGLPTEVCLQCATFLCKVHSFQLMCETSETTLRQLLTTSTHEDIKNDQQIEDNISDTKLDFSSDYEDVKSVDSNCEIISGDVDKEGILKEINVDQQKDSNTEKESCIDDTEQPIFPCEECTACFTTKIDLKVHNRIHSKGDRHTCKVCKQSFASASTLCRHMKVHNGIKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFGCKICGKAYAQSFRLLEHMRAHANEKSFICSSCGKAFSRYTSLAAHCKTHTGYKSHECTICGKRLCGSGSLAMHMKIHTGVKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCKTCGKGFPDPSRLTVHHRSHSGEKPYVCTTCGRGCVSSSQLKKHIRIHTGEKPYRCSMCSKAFPRSEDLRIHVKTHTGERNYICVVCRKGFYQASTLKVHLRIHTGEKPYSCALCDRTFSQTGPLSTHMKIHHPCSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030384;
90% Identity: iTF_00030384;
80% Identity: -