Basic Information

Insect: Agrilus biguttatus
Gene Symbol: -
Assembly: GCA_963921985.1
Location: OY998117.1:41272212-41274974[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-05 0.0011 19.6 1.0 1 23 171 193 171 193 0.98

2 12 4.2e-06 0.00029 21.4 4.8 1 23 199 221 199 221 0.98

3 12 4.5e-08 3.2e-06 27.6 1.9 3 23 229 249 227 249 0.96

4 12 7e-05 0.0049 17.5 0.2 3 23 257 277 255 277 0.98

5 12 0.00021 0.014 16.0 2.1 1 23 283 305 283 305 0.96

6 12 7.4e-05 0.0052 17.4 1.3 1 23 311 333 311 333 0.98

7 12 1.1e-08 7.5e-07 29.5 0.7 1 23 339 361 339 361 0.97

8 12 1.1e-06 7.6e-05 23.2 0.9 1 23 367 389 367 389 0.99

9 12 1.8e-06 0.00012 22.5 1.5 1 23 395 417 395 417 0.98

10 12 7.3e-07 5.1e-05 23.8 0.5 1 23 423 445 423 445 0.99

11 12 5.4e-06 0.00038 21.0 0.3 1 23 451 473 451 473 0.98

12 12 3.7e-06 0.00026 21.5 1.1 1 23 479 501 479 502 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-05	0.0011	19.6	1.0	1	23	171	193	171	193	0.98
2	12	4.2e-06	0.00029	21.4	4.8	1	23	199	221	199	221	0.98
3	12	4.5e-08	3.2e-06	27.6	1.9	3	23	229	249	227	249	0.96
4	12	7e-05	0.0049	17.5	0.2	3	23	257	277	255	277	0.98
5	12	0.00021	0.014	16.0	2.1	1	23	283	305	283	305	0.96
6	12	7.4e-05	0.0052	17.4	1.3	1	23	311	333	311	333	0.98
7	12	1.1e-08	7.5e-07	29.5	0.7	1	23	339	361	339	361	0.97
8	12	1.1e-06	7.6e-05	23.2	0.9	1	23	367	389	367	389	0.99
9	12	1.8e-06	0.00012	22.5	1.5	1	23	395	417	395	417	0.98
10	12	7.3e-07	5.1e-05	23.8	0.5	1	23	423	445	423	445	0.99
11	12	5.4e-06	0.00038	21.0	0.3	1	23	451	473	451	473	0.98
12	12	3.7e-06	0.00026	21.5	1.1	1	23	479	501	479	502	0.96

Sequence Information

Coding Sequence: ATGGGAACAAacgaatttaaaactaacaaaattTGCAGAACTTGTTTAAGTGAAAACGACGAAATGAGGTCGTTATTCTCTTCAAATGAGACTTTTGAGAAGTGTGTGAAACTGTATGAAATATTAATGAGAATAACAACTTTTAATGCAACCGAAGATGATGGTTTACCAACACATGTGTGTTTGCAATGTGCTACATTCTTATGCAAGGTCCATTCCTTTCAATTACTATGTGAAACTTCTGAAACTACTTTAAGACATTTATTAACTACAACAACACATGAACAAACAGCTTGTTCAAATATAAAAACTGATCAAGTTGAAGATAACAGTGATAGAAAGATAGATTTTAGTAGTGACTATGAAGATGTAAAGTCTATAGATACCAATTTTGAATTAGTTTCTGCTGatattgATAAAGAAGTTATTTCCAAGGATATAAATGTTGATGAGCAAAAAGACAGTAATACAGAAAAGGAATCATGCAAAGATGATACAGATCAACCAATATATCCTTGTGAAGAATGTACTGCCTGTTTTACCACAAAAGtagatttaaaagTTCACAATCGAATCCATTCAAAAGGTGACCGTCATACTTGCAAAGTTTGTAAGCAGAGTTTTGCCAGTGCTAGTACACTATGTCGACATATGAAAGTCCACAACGGCATTAAACGCCATTTATGTTCGGAATGTGGAAAAGGATTTTCGAGATCAGACGATCTTACACGACACCTAAGGACTCATACTGGGGAAAAACCATTTGGATGTAAAATATGCGGAAAAGCGTATGCACAATCGTTCAGACTTTTGGAACATATGCGTGCACACGCAAATGAAAAAAGCTTCATTTGCTCTTCATGTGGTAAAGCATTTTCACGGTACACAAGTCTTGCTGCTCATTGTAAAACTCATAGTGGGTATAAAAGTCATGAATGTACAATTTGTGGTAAAAGACTTTGTGGCTCAGGTTCTTTGGCCATGCACATGAAAATTCACACTGGAGTTAAAGATCACATTTGCCCTTATTGTGGTAAAGGATTTACGACCCCAAGTAACTTAATTATACATAAAAGGACACATACGgGGGAACGACCTTATGTGTGTAAGACGTGCGGCAAGGGATTTCCCGATCCTTCTCGTCTAACAGTGCACCACAGGTCACATAGCGGGGAGAAGCCGTACGTGTGCACCACATGCGGTCGAGGATGCGTAAGTTCGTCCCAATTAAAAAAACACGTTCGAATTCATACGGGTGAGAAGCCCTACAGATGTAGCATGTGCTCCAAGGCATTCCCACGAAGTGAAGATCTCCGAATTCACGTGAAGACCCATACAGGAGAACGGAATTACGTTTGCGTTGTGTGCAGGAAAGGATTTTACCAGGCGTCAACTCTaaagGTTCATTTGCGAATTCACACGGGGGAGAAACCGTACTCGTGCCCACTATGCGACAGGACTTTTTCTCAAACAGGTCCTCTTTCTACCCACATGAAAATTCACCATCCGTGCTCTTCATAA
Protein Sequence: MGTNEFKTNKICRTCLSENDEMRSLFSSNETFEKCVKLYEILMRITTFNATEDDGLPTHVCLQCATFLCKVHSFQLLCETSETTLRHLLTTTTHEQTACSNIKTDQVEDNSDRKIDFSSDYEDVKSIDTNFELVSADIDKEVISKDINVDEQKDSNTEKESCKDDTDQPIYPCEECTACFTTKVDLKVHNRIHSKGDRHTCKVCKQSFASASTLCRHMKVHNGIKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFGCKICGKAYAQSFRLLEHMRAHANEKSFICSSCGKAFSRYTSLAAHCKTHSGYKSHECTICGKRLCGSGSLAMHMKIHTGVKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCKTCGKGFPDPSRLTVHHRSHSGEKPYVCTTCGRGCVSSSQLKKHVRIHTGEKPYRCSMCSKAFPRSEDLRIHVKTHTGERNYVCVVCRKGFYQASTLKVHLRIHTGEKPYSCPLCDRTFSQTGPLSTHMKIHHPCSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032221;
90% Identity: iTF_00032221;
80% Identity: -