Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055661.1:13942357-13946614[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.1e-05 0.0049 18.2 1.7 1 23 451 473 451 473 0.97

2 18 4e-05 0.0039 18.6 1.8 1 20 479 498 479 501 0.94

3 18 2.3e-05 0.0022 19.3 0.8 1 23 507 529 507 529 0.98

4 18 0.0004 0.039 15.4 4.3 1 21 535 555 535 557 0.95

5 18 3.9e-05 0.0039 18.6 4.6 1 23 563 585 563 585 0.99

6 18 3.8e-05 0.0037 18.7 5.3 1 23 591 613 591 613 0.97

7 18 6.3e-06 0.00062 21.1 7.2 1 23 619 641 619 641 0.97

8 18 1.5e-07 1.4e-05 26.2 2.7 1 23 647 669 647 669 0.98

9 18 0.00011 0.011 17.2 6.7 1 23 675 697 675 697 0.97

10 18 7.8e-06 0.00076 20.8 5.9 1 23 703 725 703 725 0.98

11 18 2.4e-06 0.00023 22.4 3.0 1 23 731 753 731 753 0.98

12 18 9.8e-06 0.00096 20.5 7.9 1 23 759 781 759 781 0.98

13 18 0.00051 0.05 15.1 9.5 1 23 787 809 787 809 0.97

14 18 2.5e-05 0.0025 19.2 7.7 1 23 815 837 815 837 0.98

15 18 1.3e-05 0.0012 20.1 7.3 1 23 843 865 843 865 0.97

16 18 0.00014 0.014 16.9 0.4 1 23 871 893 871 893 0.98

17 18 0.038 3.8 9.2 5.1 1 23 903 925 903 925 0.98

18 18 9.9e-07 9.6e-05 23.6 0.8 1 23 931 953 931 953 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.1e-05	0.0049	18.2	1.7	1	23	451	473	451	473	0.97
2	18	4e-05	0.0039	18.6	1.8	1	20	479	498	479	501	0.94
3	18	2.3e-05	0.0022	19.3	0.8	1	23	507	529	507	529	0.98
4	18	0.0004	0.039	15.4	4.3	1	21	535	555	535	557	0.95
5	18	3.9e-05	0.0039	18.6	4.6	1	23	563	585	563	585	0.99
6	18	3.8e-05	0.0037	18.7	5.3	1	23	591	613	591	613	0.97
7	18	6.3e-06	0.00062	21.1	7.2	1	23	619	641	619	641	0.97
8	18	1.5e-07	1.4e-05	26.2	2.7	1	23	647	669	647	669	0.98
9	18	0.00011	0.011	17.2	6.7	1	23	675	697	675	697	0.97
10	18	7.8e-06	0.00076	20.8	5.9	1	23	703	725	703	725	0.98
11	18	2.4e-06	0.00023	22.4	3.0	1	23	731	753	731	753	0.98
12	18	9.8e-06	0.00096	20.5	7.9	1	23	759	781	759	781	0.98
13	18	0.00051	0.05	15.1	9.5	1	23	787	809	787	809	0.97
14	18	2.5e-05	0.0025	19.2	7.7	1	23	815	837	815	837	0.98
15	18	1.3e-05	0.0012	20.1	7.3	1	23	843	865	843	865	0.97
16	18	0.00014	0.014	16.9	0.4	1	23	871	893	871	893	0.98
17	18	0.038	3.8	9.2	5.1	1	23	903	925	903	925	0.98
18	18	9.9e-07	9.6e-05	23.6	0.8	1	23	931	953	931	953	0.96

Sequence Information

Coding Sequence: ATGAATTCTACGGAGCAAGGCCCCCTGTCGGGGGCCCAGACCTCAGCAGAAAATTCTAATGTACAAggtACATCTCAGAGACCTCCACCTGCAACTTCTGTACCAACAGACTTAAGAGTTAACACAACAGCCTTAAATGCGGTTGCCTTAAGCAGTGTGGCTAAATATTGGGTGCTTACCAATTTGTTACCAGGTCCAATACCGCAAGTCTCAGTTTATGGCCTTCCTGGCTCTAATAGAGCTGATAATCAGGGAAAAATATCACAAgTTTTGTTACAGGAGGCAATGCTTAGCCAGCATGCAGCTGCTGGCTTATTGCCTGCCGATCCTCTTCTTCTTCAGCAACATTCTCAAATTCCCGTTAGCATTTCGACATCCCAGGGCGTAACTAATCTAGCAATACCCGCAAGTGCCATGCACTTAGATCATCACACCCATAACAGTCACAACCAATCAATTGCTAATCAACAAAACGAAGTGCAAACCATCGTTTCACAATCAAATCAATTAAGCACGCAACAAATTCAAAGCAGCCAACAAAATCACGCACAAAACACTCAACAACAccaacagcagcagcagcaacaacaccaacagcaacaacaaaatATGGTCCAAGTACAGGTACAAGATAACTTGGTTTCGGTTATTGAAGATAGTAAAGAACATAAAGATATGATTGCTGCACAAATAAGCCAAAATCAGATGCATTTGAATGGAAGTCAACAGCAAATAAATCATCAAGCATTAACAGTGCAGCAATTGCAACATATGCAGGTACAACAGGTTCTTGACAACGTTGTAAGAATGGAAAATAACGTTCAAAATGAACAAAATCATTCAGGGAACGATCAACAAAATTCGGTCAACGAAAATcatatacaaataattaaagacgAGAAAAATGTCTCCAACTGTCCAAAACTTCTGACTGGTGCCTCTCACTTTGGAATGCACGATGTGAAAACGAATTTGATGGATATGAGGACGACCGATGGAAATCCAGTTAAAATAGCAGGAGGCATTCCTGAACAAGATTTGGCGAAATCACTCGGTATCGAAGtagtacaaaatatttataaagttaaCGTGGATGATCTCAACCAATTGTTAGCATATCATGAGGTTTTTGGGAAGTTGCAGGGCGAAATAGCTACACAGTCTAATATAGTTCAAAACACTTCTGGAAATACGAATTTATCcttacaacaacaacaacagcaaccTCAACAGAACAACATTTCGAACAATATTCAGATTGTTACTCCGAAAACTCTTTCGGAAAATGACCATGAACCATCTACAAGTTCGATTACTGCAGATAGTCCTCCTATAATAATGACAGGGAGCCACGTTTGTgatatttgtggaaaaatCTTTCAATTTCGATACCAACTGATTGTGCATCGACGTTATCATAGTGAAAGGAAACCGTTCACTTGTCAGGTTTGTGGAAAAGCATTCACAAATGCGCAGGAGCTTACCCGACATGGCAAATGCCACTTAGGTGGTAGCATGTTCACTTGTGCAGTTTGTTTTCATGTTTTCGCGAATGCAGCATCTTTAGAAAGGCATATGAAACGTCATTCTACTGATAAACCATACAATTGCACAATTTGCGCGAAATCTTTTGCAAGAAAAGAACACTTGGAAAATCATACGCGCTGCCATACTGGCGAGACACCATACAGGTGTCAGTATTGTGCTAAAACGTTTACAAGAAAGGAACACATGGTAAATCATGTCCGTAAACATACCGGAGAGACTCCTCATCGGTGTGAAATTTGCAAAAAGTCGTTCACAAGAAAGGAACATTTTATGAATCACGTCATGTGGCATACTGGTGAAACACCACATCATTGCACTATTTGCGGTAAGAAGTATACAAGAAAGGAGCACTTGGCTAATCACATGCGATCCCATACAAACGACACGCCATTTAGATGTGAAATTTGTGGAAAGTCGTTCACGAGGAAAGAACATTTTACGAATCACATAATGTGGCACACAGGCGAGACGCCACATCGATGTGATTTTTGTTCGAAAACATTCACTCGTAAAGAGCACTTACTCAATCATGTACGACAACATACCGGTGAATCTCCTCATAGGTGTGAATATTGTTCGAAATCATTTACTCGAAAGGAGCATCTAATAAATCACGTGCGACAACATACAGGTGAGACACCGTTTAGGTGCAACTTTTGTCCTAAAGCGTTTACGCGTAAAGATCATTTGGTTAATCACGTGAGACAACATACCGGCGAATCACCTCATAAATGCACGTACTGCACGAAATCGTTCACTCGTAAAGAACACTTGACAAACCACGTGCGTCAACACACAGGCGAGTCTCCTCATCGATGTCATTTTTGTTCGAAACAGTTCACGCGTAAAGAACATTTGACCAATCATGTGCGTTTACACACGGGCGAGTCGCCACATCGTTGCGAATTCTGTCAGAAAACGTTCACACGTAAGGAGCATCTCACGAATCATTTACGACAGCACACTGGCGAAACACCCCATTGTTGTACTATTTGTTCGAAACCATTTACGCGAAAAGAGCACCTTATAAATCACATGCGGTCGCATACTGGAGAAAGACCGTTTTCGTGTGGTGAATGCGGTAAATCGTTCCCTTTAAAGGGAAATTTGCTGTTCCACCAACGATCTCATAATAAAGGGGCGGAAGCCGAAAGACCATTCCGTTGCGACCTATGTGACAAAGACTTTATGTGCAAGGGACATTTGGTATCTCATCGGAGATCTCATAGTGGCGAGAGGCCGCACGCGTGTCCGGATTGCGGTAAGACCTTTGTTGAAAAGGGTAACATGTTACGACATCTCAGACGACACACGAATGAGAATGGTCAATTGCGGCCCCCTGTTGCGGGAACACAAGTTTCGTCGTCTTCAAATGTGACTCCGGTGCAAACGTCGGTGTCTGCAACGCTGCAAATTCCACAAGTAAGTCAGGCACAGAGTTTATCGAACGCAGTACCCACCGGTGCTCCCCCTAGCATCGTTCAACAGCAGGCACAACATCTGTCGATGCATCAGCAGGCTGGACATCCGGTCGTAGTGCCCACTGGAAACGCGAACGTTCTTACTTCTTACTGA
Protein Sequence: MNSTEQGPLSGAQTSAENSNVQGTSQRPPPATSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGSNRADNQGKISQVLLQEAMLSQHAAAGLLPADPLLLQQHSQIPVSISTSQGVTNLAIPASAMHLDHHTHNSHNQSIANQQNEVQTIVSQSNQLSTQQIQSSQQNHAQNTQQHQQQQQQQHQQQQQNMVQVQVQDNLVSVIEDSKEHKDMIAAQISQNQMHLNGSQQQINHQALTVQQLQHMQVQQVLDNVVRMENNVQNEQNHSGNDQQNSVNENHIQIIKDEKNVSNCPKLLTGASHFGMHDVKTNLMDMRTTDGNPVKIAGGIPEQDLAKSLGIEVVQNIYKVNVDDLNQLLAYHEVFGKLQGEIATQSNIVQNTSGNTNLSLQQQQQQPQQNNISNNIQIVTPKTLSENDHEPSTSSITADSPPIIMTGSHVCDICGKIFQFRYQLIVHRRYHSERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICAKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKQFTRKEHLTNHVRLHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCTICSKPFTRKEHLINHMRSHTGERPFSCGECGKSFPLKGNLLFHQRSHNKGAEAERPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRRHTNENGQLRPPVAGTQVSSSSNVTPVQTSVSATLQIPQVSQAQSLSNAVPTGAPPSIVQQQAQHLSMHQQAGHPVVVPTGNANVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030380;
90% Identity: iTF_00030380;
80% Identity: -