Amal017536.2
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- bab1
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:8919271-8924502[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00092 0.18 12.6 0.0 20 35 4 20 1 25 0.87 2 2 2e-16 3.8e-14 53.1 0.0 1 43 138 181 138 183 0.95
Sequence Information
- Coding Sequence
- ATGCGATTCACTCAAGCTTCTGCACGTTACGGTATTCCCAAAGGCACGCTCTACGACAACATTTTAGGTAAATCGAAACGTATGGCGGTGCTAGAAGAGGCCGGTTTAAATTCGTCCGAAGAAGAAGCAGTTTTGGAATTTTGTTGTGACGTTTCAGTTTCACCTTATAATAGACgtacaaaaaaatcattacattcaattttaaaattcgtaGAAAAGATAAGGAGGGCTCGCGACCCCGAGTTCATGTTTACTGGTCTCTCAGGTTTTCGATGGTGGTGGGCCTTTTGCAAAAAACACAcagACAGCTACCAATATCAACTGCAGTCCATGTGGCAAAAGTGCTGGAACACGAATCAGAGTCTGGTGCATAATTTACGATTTAGAGAACGAGGTCCGTTGAAATCGTGGAGACCGGAAACGATGGCCGAAGCCATTTTTTCCGTCCTCAAGGAAGGACTTTCGCTATCGCAGGCCGCCAGAAAATACGACATACCCTATCCGACATTCGTTCTTTACGCCAATAGAGTACACAACATGTTAGGACCATCTGCTGATGGTGGATCagatTTGAGGCCCAAGGGTAGGGGAAGACCGCAACGTATTCTTCTCGGTGTTTGGCCTGATGAACACATAAAAGGAGTCATTAGGGCAGTTGTCTTTCGTGATTCTCATCACATTAAAGAAGATCCAATTGGATATCCACGTATTcatgACGGGGTGGGAATACCGGCCAGTTACCCTAACAATACATGCAACAATGGTTCAGACCCCACGGTTTCTCCCGGCGCTGCGGCCGCAGCAGCCGTCGCGGCGGTCGCCCAAGGTCTTCGTCAACAAATGTGCAACATGATGGCAGCcgcacaacaacaacagcaacaacaacagcagcagcaacaacaacaacaacagcaacagcagtcacagcaacaacaacaacaaaattgCGTTCATGACAGTCTCGTCAATTCTTTGACGTTAGCGGCCCATTGCACGGCCTCTCCACTTCCTATGCCCACGACGGTACTTTCGAGTAACGGTGCAACACCCACATTGAGTCTAGGCGGTCATCGGATGACAAGTCCGGCCAGTGTACAGGACTTGCGAATAAGCCCTACAGGATCAGCCATGGAAAGTCCTCTATCGTCACCACTGGGATTAACTATATCGAACGCAATGGTGCCGCCTTCTTCACAGCAACAACAACCACCAACCCCAACGGCAATGGGTTTGACAGCGGGTGGTAATGACGTAACAGGTATTGGCATTTCGGGGATGACATACAAACCGTCCGCGAGACCATTCGCCTCGCCGCGACCTGAAACCCTTTTCCAAGAAGACATCGACGAGATAGTGAAACCGATGCACACTGCAACCACTACTTCTCCCCATCATCTTCATCACCACCATCCTCATCACCATTTACCCAAAGATTCGATGACGACGACGACGTCCATTAAAATTGAACCGTTGACAGAGTGCAGGGGCGAATGA
- Protein Sequence
- MRFTQASARYGIPKGTLYDNILGKSKRMAVLEEAGLNSSEEEAVLEFCCDVSVSPYNRRTKKSLHSILKFVEKIRRARDPEFMFTGLSGFRWWWAFCKKHTDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIKGVIRAVVFRDSHHIKEDPIGYPRIHDGVGIPASYPNNTCNNGSDPTVSPGAAAAAAVAAVAQGLRQQMCNMMAAAQQQQQQQQQQQQQQQQQQQSQQQQQQNCVHDSLVNSLTLAAHCTASPLPMPTTVLSSNGATPTLSLGGHRMTSPASVQDLRISPTGSAMESPLSSPLGLTISNAMVPPSSQQQQPPTPTAMGLTAGGNDVTGIGISGMTYKPSARPFASPRPETLFQEDIDEIVKPMHTATTTSPHHLHHHHPHHHLPKDSMTTTTSIKIEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030905;
- 90% Identity
- -
- 80% Identity
- -