Acya032303.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376704.1:4309899-4313135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0078 1.9 10.5 2.0 2 23 87 109 86 109 0.94 2 11 0.015 3.8 9.6 5.0 3 23 196 217 195 217 0.92 3 11 4.7 1.2e+03 1.8 7.6 3 23 389 410 388 410 0.95 4 11 0.039 9.7 8.3 0.1 1 16 467 481 467 487 0.82 5 11 5e-05 0.012 17.4 0.5 3 23 553 574 552 574 0.97 6 11 0.015 3.8 9.6 0.4 2 23 603 625 602 625 0.90 7 11 0.0061 1.5 10.8 3.6 2 23 670 692 669 692 0.96 8 11 0.065 16 7.6 3.7 2 23 706 728 705 728 0.92 9 11 0.0002 0.049 15.5 0.6 2 23 778 800 778 800 0.95 10 11 0.063 15 7.7 0.0 1 23 877 899 877 899 0.97 11 11 0.00016 0.04 15.8 0.2 2 23 916 938 915 938 0.94
Sequence Information
- Coding Sequence
- ATGACTTCCGTTACTCTGACCACGACATCAGAACCAATGAATGGAAGTTTCTCAACATCATTAGACGAAAGTGTTACAAGTAAACCGGCCTTTGAAACCCCAAAGCCTGTTAAACGTTGCCTCGCAGCACCCCTAGACTCCTACAAAAAACGCCGGAAACAAGCTACGCCCGTAAGAATTTCCGCGACAGAACCTCAGGATGTTGTACACTCACCGGAAGGTAAGCCTTTGGATTCACCAGTGCCAGAACCCGAAATTAAATGCTCAGAATGTCACTTCCTATTCGATTCATCTGATCAACTGCACAGTCACATTGCCAACGAACATCCGAATTTCCATTGCAAAAGAGAACCCGAGGAAAATTTGAATTATGAACCGCAACCTCAAAACGCCTTCGACATATCGTCAACAAGAAATGATATTTCGTGGATTGGTGATATTCAAAGTAAAGACTTTCTCAATTTAAATTTTCATGGATTAGTTTTTTCTCCGGCAAGTTCTTTATTTATGTCGTTACCGTCTTTTCCCCAAACTGATAGCACCTCGTCGAGGCAATCGGTCAGAATATTTAACCCGGACGCTTTTTGCGACCTTTGCAACAAAGAATTTTGCAACAAATACTTCTTAAAAACGCATAAAGCCAACAAACATGGCATCTATGCGGATCCGCCGTCTTCTGAAGCCCTTGCAATTTCTCCATTCATTTCGAGTATGATGAAAATACCCACTACGAGTTTTAATTGTGATATACCCTCATTAAAGACAGATATAAAACAACAACAACAACAACACCAACCTCAAAAAGCTCCATTTTGTGATTTGCTTTCGTCAATTCACACAAACAAAGCATTTCCGAAAATCTCAAAACAAACCGTCACAAACTTTACCGAAACCGAAAACAAAGAGGTGATAGATCATCCTGAGCAAAGCACTTCCGAGACCGAACAATTTACTGCAACGATAAAAAATTCGGACGATAACGAGGGCAGCTGCAGCCCAGGGGTAATTACAGCCAGCATGTTCCAGTACAAAAGTGACTCAAACTTAGACCAGGACGGACTAAATTATTCGACTTCCAATAAATCGTCACCTGCTCCGTCGTCCAAAGACATGGACGCCTCAATGAAATACAGAAAAGCTGGCATAATGAATCCTAAAGCTTTCTGTGAGATTTGCTGCAAAGAATACTGCAACAAGTACTTCCTGCGAACGCACAAAATGAAGCGACATGGGATATATGTACCTGACGAAGGACGCGACAGTAAGGATAACAAATCGGAACCGTTCCAGTGGAACCAGAACATCCAAACGAGCCCTCTCAACCTCATAATGAACGAGCAGCAAAGCAATTCCAATTCTGCATCCGAACGAGAACGAAAAAATTTAACCCCTCAGGATTACAGATGTGACATTTGCGGAATTAATTTTCAAAACAGTTCCTTATCACATTTACACAACGTTAGCGTTCATTCGTCGGATAAAGAGGCGTCAACGAGCGATATCAATAGAGAACCGCGAAAAAGTTTAGACATTCAGGCAACGTCCGCGGAACGGCGCGGGTCATGCAGTGCAGAACCCATCAACGAAGATCTTCAAAAATTACAAACAATGATCCTTCAGCTTAACGAACTGGATGTGGGCAAGACAAATTTATTGTGCAATATTTGCAGTAAAGAATACGACAGCAAATACACGCTGCAAGCTCATATGATGTCGACTCATGGGCTTCTACTCGAAGATGTTACGTCAGGGGATAAATCTGGTAGTGGTCTAGGTCCAGGAACGAGCGGCACGAGCAACAGTACGGTTTGTGATTTGTGCGGAAAAGATTTTTTCGACGCGGAAGGAGTTAAAAAACATGCACTCGAATGTCATCCGATCAATTTCAAAGAATCGAAAGAAGGCAGTTACGTAAATGCCGACAAAGGAACAACCAAGACCATGGTAGCTGGTACTCCAACGTCATCGGAAAGACGTTCGGCACCGGTGCTCACGCCTAGCAGCAGTTACTGTGAAATATGTAACAAAGAACTTTGCAACAAGTATTTCATGAAAACGCACATGCAAAGAATGCATGGGATAGAGATAGAGAACGGCGCACAAATTGGCGGTGTTGTGTGTGACATCTGCAACAAGGAGTTGTGCAGTAAATATTTTTTACGAGTTCATAAACACAACACGCACGGGATTGCCGAATATAATTCGGGATTTCTTCAGAGCCGTAAGGGCGACACCGAGTCGATTCCAATGCTTCCTACAGAAAGCGATCCCGCTTTGAAACCGATTGATTTGGCCGATTTGAGTCACAGATATTTTTCGCACTTTACAGAAGTCTGTTCGATTTGCAGCAGGAGATTCAGGAGCACCAAGTGGCTGAAGGCTCACCTTTTGAGCGACCACGGTCAAGCCGGTGCCGAGAAATGGGTAGAATTGGAGCAGAACATCACGCCGTCGAATCTTAATTTTAACAATAAAGCCGCCGTACCGTTACCGAACGCTCCACAGGTAGAAAGGACAAGCCCGTTAATAAAAATACCAAACGGAAATCAAGAGACCAACAACTCGAAAATAAAAACTCAAAACGTATTTTCTAGCATTTTTGGTGCCGACGAGAATTCCATAAAAACGTACGATTGCTCTTATTGTCCTTTCTCAACGCCGGTTCTCCCTTTGTTACTCGTACATGAACGTTCCCACGATATGCATAATACGTCATCGTCGGAAAATGAAACTGCTAATGTGGTAAAATGTCCCGTTTGTGCCAAATCGTTTCCACAGACAGGAACTCTACAGCACCATATCGTCAGCGAGCATCCTTTCTTTCATTTATCACCTCAGGAGGAGAATCAAAACCATCAAAACGGAGTGCCGAAGGATGGCTGTGATAATTTTCAGGAAGAATGGAAAATTGATGATTCTTTTAACGCAATGGCCAACAATAAAGATGATAAAAGTAAGAATCGATTGAAACGTAAACTGATCAATTCGGAAGTATCGTTCGAAACGACTCAAACGCTAAAGGAAGTTGTGAAGAAATTTCAACTTCCAGCGACGTACGCTTTACCCCTGACGTCGTCTGATGACGACGATGCGGTCTTTCCAGGTTACATCATGCAAGCATTCACCCTGAACGAGTTGGCCTCGGAAAGAAGTTTTGTACCGTCCGTGGTGTTCCTTCCGGTGCTTCAGAAATTTTCCAACCCCTTAAATGTCACCTTCAACTTGAGCCCAGCTTGA
- Protein Sequence
- MTSVTLTTTSEPMNGSFSTSLDESVTSKPAFETPKPVKRCLAAPLDSYKKRRKQATPVRISATEPQDVVHSPEGKPLDSPVPEPEIKCSECHFLFDSSDQLHSHIANEHPNFHCKREPEENLNYEPQPQNAFDISSTRNDISWIGDIQSKDFLNLNFHGLVFSPASSLFMSLPSFPQTDSTSSRQSVRIFNPDAFCDLCNKEFCNKYFLKTHKANKHGIYADPPSSEALAISPFISSMMKIPTTSFNCDIPSLKTDIKQQQQQHQPQKAPFCDLLSSIHTNKAFPKISKQTVTNFTETENKEVIDHPEQSTSETEQFTATIKNSDDNEGSCSPGVITASMFQYKSDSNLDQDGLNYSTSNKSSPAPSSKDMDASMKYRKAGIMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYVPDEGRDSKDNKSEPFQWNQNIQTSPLNLIMNEQQSNSNSASERERKNLTPQDYRCDICGINFQNSSLSHLHNVSVHSSDKEASTSDINREPRKSLDIQATSAERRGSCSAEPINEDLQKLQTMILQLNELDVGKTNLLCNICSKEYDSKYTLQAHMMSTHGLLLEDVTSGDKSGSGLGPGTSGTSNSTVCDLCGKDFFDAEGVKKHALECHPINFKESKEGSYVNADKGTTKTMVAGTPTSSERRSAPVLTPSSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIAEYNSGFLQSRKGDTESIPMLPTESDPALKPIDLADLSHRYFSHFTEVCSICSRRFRSTKWLKAHLLSDHGQAGAEKWVELEQNITPSNLNFNNKAAVPLPNAPQVERTSPLIKIPNGNQETNNSKIKTQNVFSSIFGADENSIKTYDCSYCPFSTPVLPLLLVHERSHDMHNTSSSENETANVVKCPVCAKSFPQTGTLQHHIVSEHPFFHLSPQEENQNHQNGVPKDGCDNFQEEWKIDDSFNAMANNKDDKSKNRLKRKLINSEVSFETTQTLKEVVKKFQLPATYALPLTSSDDDDAVFPGYIMQAFTLNELASERSFVPSVVFLPVLQKFSNPLNVTFNLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032385;
- 90% Identity
- iTF_00032385; iTF_00030547;
- 80% Identity
- -