Abig018888.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998127.1:6006976-6010245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.84 10.5 2.0 2 23 87 109 86 109 0.94 2 11 0.023 1.6 9.6 5.0 3 23 196 217 195 217 0.92 3 11 7.1 5e+02 1.8 7.6 3 23 386 407 385 407 0.95 4 11 0.059 4.1 8.3 0.1 1 16 464 478 464 484 0.82 5 11 7.6e-05 0.0053 17.4 0.5 3 23 554 575 553 575 0.97 6 11 0.11 7.4 7.5 0.5 2 23 614 636 613 636 0.91 7 11 0.0093 0.65 10.8 3.6 2 23 683 705 682 705 0.96 8 11 0.098 6.9 7.6 3.7 2 23 719 741 718 741 0.92 9 11 0.0003 0.021 15.5 0.6 2 23 791 813 791 813 0.95 10 11 0.095 6.7 7.7 0.0 1 23 888 910 888 910 0.97 11 11 0.00025 0.017 15.8 0.2 2 23 927 949 926 949 0.94
Sequence Information
- Coding Sequence
- ATGACTTCCGTTACTCTGACTACGACATCAGAACCAATCAATGGAAGTTTCTCAACATCATTGGACGAAAGTGTTACAAGTAGACCGGCCTTTGAAACCCCAAAGCCTGTTAAACGTTGCCTCGCAGCTCCCTTAGACTCTTACAAAAAACGACGAAAACAAGCTACGCCCGTAAGAATTTCCGCGACAGAACCTCAGGATGTTGTACACTCACCAGAAGGTAAGCCCTTGGATTCACCAGTGCCAGAACCCGAAATTAAATGCTCAGAATGTCACTTTCTATTCGATTCATCTGACCAACTGCACAGTCACATTGCCAACGAACATCCAAATTTTCATTGTAAAAGAGAACCCgaggaaaatttgaattatgaACCGCAAACCCAAAACGCCTTCGACATATCGTCAACAAGAAATGATATTTCGTGGATTGGTGATATTCAGAGTAAAGACTTTCTCAACCTAAATTTCCATGGATTAGTTTTTTCTCCGGCAAGTTCTTTGTTTATGTCGTTACCGTCTTTTCCCCAAACTGATAATTCTTCGTCGAGGCAATCGGTCAGAATATTTAACCCGGATGCCTTTTGTGACCTTTGCAACAAAGAATTCTGCaacaaatactttttaaaaacgCATAAAGCTAACAAACATGGTATATATGCAGATCCGCCGTCTTCTGATGCCCTTGCAATTTCTCCATTCATTTCGAGCATGATGAAAATACCCACTACAAGTTTTAATTGTGATATACCCTCTTTAAAGACAGAATTGAAACAGCAACCTCAAAATCAAAAACCTCCATTTTGTGATATGCTTTCGGCAATTCACACAAACAAAGCTTTTCCTAAATCCTCAAAACAAACCGTTACTAACTTTACCGAAACCGAAAACAAAGAAGTGATAGATCATCCTGAGCAAAGCACTTCCGAGACCGAACCATTTACGGCAGCTATTAAAAACTTAGACGATAACGAGGGCAGCTGCAGTCCAGGGGTAATTACAACAAGCATGTTCCAATATAGAAGTGACTCTAACTTAGACCAGGACGGACTAAATTATTCTACTTCCAACAAATCATCGCCTGCTCCGTCATCCAAAGATATGGACGGTtcaatgaaatacaaaaaagctgGAATAATGAATCCGAAAGCTTTCTGTGAAATATGTTGCAAAGAGTACTGCAACAAGTACTTCCTACGAACGCACAAAATGAAACGACATGGTATATACGTTCCTGACGAAGGACGTGACAGTAAGGATAATAAATCGGAACCGTTTCAATGGAACCAGAACATCCAAACAAGTCCTCTAAATCTTATAATGAACGAACAACAAAGCAATTCTAATTCTGCATCTGAAAGAGAACGAAAAACATCGACCCCTCAGGATTACAGATGCGAAATTTGTggaattaatttccaaaatagtTCTTTGTCACATTTGCATAATGTCAGCGTTCATGCATCGGAAAAAGAAACTTCAACAAGCGATATCATCAATAGAGAGCAGCTCCTCCGAGGGACAAAATGTTTGGAACTTCAGACGACATCGACGGAAAAGGGGTCGTGTAGTGCCGAACCTATAAACGAAGATCTTCAAAAGTTACAAACGATGATTCTTCAACTTAACGAACTAGACGTGGGCAAGACAAATTTATTGTGCAATATATGCAGTAAAGAATACGACAGTAAATACACCCTACAGGCTCATATGATGTCGACTCACGGGCTTCTACTGGAAGATGTTGCACCAGGGGATAAATGTGGAACTGGAAGTGGTCTAGCTCCGGGAACCAGTAGCAGAGATATCGGGAGCAGTACCAGCACCAGCAATAGTACAGTTTGTGATTTGTGCGGAAAAGATTTTTTCGAtgttgaaggaattaaaaaacatgttctCGAGTGTCATCCGATTAATTTCAAAGAATCGAAAGAAAATAATTACACAAATACTGAAAAATCAGTGAGTAAAATTACGGTTCCTGGCACTTCGACATCATCATCAACGGAAAGACGTACAGCACCGGTGCTCACGCCTAGCAGCAGTTACTGTGAAATATGTAACAAAGAACTTTGCAACAAGTATTTCATGAAAACGCACATGCAAAGAATGCATggaatagaaatagaaaatggcGCACAAATTGGTGGTGTAGTGTGTGACATCTGTAACAAAGAATTGTGCAGTAAATACTTTTTACGAGTTCATAAACACAATACACACGGAATTGCCGAATATAACTCAGGATTTCTTCAGAGCCGTAAAGGCGATGCGGAATCAATTCCAATGCTTCCTACCGAAAGCGATCCTGCTTTGAAACCGATAGATCTGGCCGATTTGAGTCACAGGTATTTTTCCCATTTTACGGAAGTGTGTTCGATTTGTAGCAGGAGATTCAGAAGCACCAAATGGTTGAAAGCTCACCTTTTGAGCGATCACGGTCAAGCAGGTGCCGAGAAGTGGGTAGAATTAGAACAAAATATAACGCCGTCGAAtgttaattttaacaataaagtCGTTCCTTTACCGAACGCTCCTCAGGTCGAAAGAACAAGTCCATTGATAAAAATACCAAACGGAAATCAAGAGACCAACTCGAAAATTAATACGCAAAACGTATTTTCTAGCATTTTTGGTGCCGACGAGAATTCTATAAAAACGTACGATTGCTCTTATTGTCCTTTCTCAACGCCAGTTCTCCCTTTATTACTTGTACACGAACGTTCACACGATATGCACAACACATCATCGTCGGAAAATGAAAATACTAATGTGGTTAAATGTCCCGTTTGTGCCAAATCGTTTCCACAGACAGGAACTCTACAGCACCATATCGTCAGCGAACATCCTTTCTTTCATTTGTCACCTCAGGAGGAGAATCAAAACCATCAAAACGGAGTGCCGAAGGATGGCTGTGATAACTTTCAGGAAGAATGGAAAATTGATGATTCTTTTAACGCAATGACCAACAATAAAGATGATAAAAGTAAGAATCGATTGAAACGTAAGCTGATCAATTCGGAAATGTCGTTCGAAACGACTCAAACACTAAAGGAAGTTGTGAAGAAGTTTCAACTTCCAGCGACGTACGCTTTACCTCTAACGTCATCAGATGATGACGAAGCGGTCTTTCCAGGTTACATCATGCAAGCTTTTACCCTGAACGAGTTAGCCTCGGAAAGAAGTTTTGTACCGTCCGTGGTATTCCTTCCGGTGCTTCAGAAATTATCCAACCCCTTAAATGTCACCTTCAACTTGAGCCCAGCttga
- Protein Sequence
- MTSVTLTTTSEPINGSFSTSLDESVTSRPAFETPKPVKRCLAAPLDSYKKRRKQATPVRISATEPQDVVHSPEGKPLDSPVPEPEIKCSECHFLFDSSDQLHSHIANEHPNFHCKREPEENLNYEPQTQNAFDISSTRNDISWIGDIQSKDFLNLNFHGLVFSPASSLFMSLPSFPQTDNSSSRQSVRIFNPDAFCDLCNKEFCNKYFLKTHKANKHGIYADPPSSDALAISPFISSMMKIPTTSFNCDIPSLKTELKQQPQNQKPPFCDMLSAIHTNKAFPKSSKQTVTNFTETENKEVIDHPEQSTSETEPFTAAIKNLDDNEGSCSPGVITTSMFQYRSDSNLDQDGLNYSTSNKSSPAPSSKDMDGSMKYKKAGIMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYVPDEGRDSKDNKSEPFQWNQNIQTSPLNLIMNEQQSNSNSASERERKTSTPQDYRCEICGINFQNSSLSHLHNVSVHASEKETSTSDIINREQLLRGTKCLELQTTSTEKGSCSAEPINEDLQKLQTMILQLNELDVGKTNLLCNICSKEYDSKYTLQAHMMSTHGLLLEDVAPGDKCGTGSGLAPGTSSRDIGSSTSTSNSTVCDLCGKDFFDVEGIKKHVLECHPINFKESKENNYTNTEKSVSKITVPGTSTSSSTERRTAPVLTPSSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIAEYNSGFLQSRKGDAESIPMLPTESDPALKPIDLADLSHRYFSHFTEVCSICSRRFRSTKWLKAHLLSDHGQAGAEKWVELEQNITPSNVNFNNKVVPLPNAPQVERTSPLIKIPNGNQETNSKINTQNVFSSIFGADENSIKTYDCSYCPFSTPVLPLLLVHERSHDMHNTSSSENENTNVVKCPVCAKSFPQTGTLQHHIVSEHPFFHLSPQEENQNHQNGVPKDGCDNFQEEWKIDDSFNAMTNNKDDKSKNRLKRKLINSEMSFETTQTLKEVVKKFQLPATYALPLTSSDDDEAVFPGYIMQAFTLNELASERSFVPSVVFLPVLQKLSNPLNVTFNLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032385;
- 90% Identity
- iTF_00031354;
- 80% Identity
- -