Basic Information

Insect: Agrilus cyanescens
Gene Symbol: su(Hw)
Assembly: GCA_947389935.1
Location: OX376706.1:2561533-2564333[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.8e-06 0.00046 21.9 0.5 3 23 236 257 235 257 0.95

2 13 1.1e-05 0.0028 19.4 0.3 1 23 289 312 289 312 0.97

3 13 0.0008 0.2 13.6 0.0 2 20 318 336 317 339 0.92

4 13 7e-06 0.0017 20.1 2.3 1 20 345 364 345 366 0.95

5 13 1.6e-08 3.9e-06 28.4 0.9 1 23 377 399 377 399 0.99

6 13 2.8e-05 0.007 18.2 3.1 1 23 409 431 409 431 0.98

7 13 3.3e-06 0.00081 21.1 0.3 1 23 437 459 437 459 0.98

8 13 2.3e-05 0.0056 18.5 0.4 1 23 465 487 465 487 0.99

9 13 1.4e-05 0.0035 19.1 2.3 1 23 493 515 493 515 0.96

10 13 4.7e-05 0.012 17.5 2.1 1 23 521 544 521 544 0.95

11 13 1.6e-05 0.0039 19.0 1.0 2 23 551 572 550 572 0.95

12 13 6e-05 0.015 17.2 0.4 1 23 578 600 578 600 0.98

13 13 2.1e-06 0.00053 21.7 4.4 2 23 607 629 606 629 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.8e-06	0.00046	21.9	0.5	3	23	236	257	235	257	0.95
2	13	1.1e-05	0.0028	19.4	0.3	1	23	289	312	289	312	0.97
3	13	0.0008	0.2	13.6	0.0	2	20	318	336	317	339	0.92
4	13	7e-06	0.0017	20.1	2.3	1	20	345	364	345	366	0.95
5	13	1.6e-08	3.9e-06	28.4	0.9	1	23	377	399	377	399	0.99
6	13	2.8e-05	0.007	18.2	3.1	1	23	409	431	409	431	0.98
7	13	3.3e-06	0.00081	21.1	0.3	1	23	437	459	437	459	0.98
8	13	2.3e-05	0.0056	18.5	0.4	1	23	465	487	465	487	0.99
9	13	1.4e-05	0.0035	19.1	2.3	1	23	493	515	493	515	0.96
10	13	4.7e-05	0.012	17.5	2.1	1	23	521	544	521	544	0.95
11	13	1.6e-05	0.0039	19.0	1.0	2	23	551	572	550	572	0.95
12	13	6e-05	0.015	17.2	0.4	1	23	578	600	578	600	0.98
13	13	2.1e-06	0.00053	21.7	4.4	2	23	607	629	606	629	0.96

Sequence Information

Coding Sequence: ATGGAGGAAGAAGAAGTTTCTTCCTTGGATGTGCAGAAAATCGAACCTTTAGAATTAGAGTGCGAAGAGGAAGATATAAAAACAACTTTACTACAGAATGTAGAGCTTCCATCAGAGGGCAGCAATCAGTCGATCTTTTTAGATGGATTTCCACCAGTCACAAATTCTGATGGTAATTTGGAAATAAACAGTTTTGACGATCCCCATGAAAGCGCTATCATAAATGACCCCACACTGGATGGAGTAACAGAAGACCGAATTGAAGAAATAGAAATTGAAGAGAACGGTCACGAAGAAGTAGAATCCGACTTTATAATAGAGGAACAGACTGAAAATGTTGTCGATTCTCGGTACATTCAGGTAGACTCGGGGGGCCATTACATTCAACTCAGATCCGGTCAGAAGTACGTTCAAATAGCCGAAACCGGCGAATACCTTGAAATCCACGATGCCGACGACTTTGAGATTGAAGATCAGAGCCAAGAGTATCCCTCGTCTGTAGACGAAGACGACGCAGCAAACGAAGAGGAAGAGATGAGAGTAGAGATGCAAACCGAAGACGAAGATGACGAAGAAGAAGAACCCATGACAGAAGATGATGAAGCTGAAATAAACTACAACAGCGAAACTACAGACGATCCTAATGACCCCGATTTTGAAGTTAAACCTAAAAAGAAAGAGCCCATCATTGACGAACCGAACCCATGTACAATTTGTCAGAGAACTTTTAAAACATCAGCTAGTTTGAAAAGACACATAACTGTCGTCCATCCTTCAGAAAAGGAGAGTCAGGAAGATCCTTTGGCCTTTGAGCTTTGCTACTGTTGTGGAGAACCTGTTGATTCAGCTCATACGACGGGAGATTACGAGTGCAGTGAATGTGGAAAATTGTTCGTGATGTCGAACAGTCTACAGCGGCACCAGAGTATCGAGCACGGCCACGACCTGTGGAAATGCGTCGAATGCGAAAAGGTATTCGCAGACCGTCAAATGCTCATCGATCACATGCCCATTCACCCACTGACGAAGCCTTACTATTGCAAGGACTGTCACAGAGAGTTTGCCAGGAAGTACAATCTCATCAGACACTATTCCCAAACGGGATGCAATGGGAGCACTAGAATGATGTTTAAATGTCCTATTTGCAAGAAGATTTTTGCGAGAAAAGATAATCTTCGAGAACATTTGAGAAGCCACACGGGGACCGCCAAAAAAAAGAAGACTTTTATTTGCGAGTACTGCCACAAGGAGTTCCACGGTTCTACGCTGTTGATCGTTCACATGAGAACTCATACCGGTGAAAGACCATACCCTTGCGATCTTTGTCCTAAAAGATTTCCTTCAAGTGGTGCAATGAAGAAACATCGACGAATGCATACAGGAGAAAAGCCCTACGAATGCGCCAAAtgtggaaacaaatttgcggccaaagagacgctgaaccgtcacgtgcgtacacatacgggccacaagccccacaagtgtcagttttgcggcaaggcttttatccaagcagctcaattgcgagcacacatttttcaccataccggcgagaacgcgtacacttgtccccattgcaatcgagccttcaataggcgagcacgtctcaccatgcacgtcaaattcgtacatgaaggtgcaaaacccttgcaatgcaaccagtgcgaaaagtctttcTATAGAAAAGAGGACCTGTCCAGACACGAACTGCTTCATTCCGGAGTCAAACCATTCGAATGCGAGGTGTGTTTGAAACGTTTCGCCATCAAGTCTTCGCTCAAACTCCACCTGTTGACTCACCGAAAAGAGCAGCCATGTAAGTGTGACGAATGCGGACGAGCGTTCATTCGTCAGGATTGTCTGTTACGACATATGCGCTCGAAGCACCGCGACCTCTTGGAGGACATAATGGCCGGCGCGGAGAAGAAGCGTCTCCAGCAACAGCTACTGAAAGTCGCTTCTGCAGCCGCGTCGAACAAAGAGAGCGGCGGTTCGTTGAGTGACAATCGTATCTGGAACGAACTCACGTTAACCGACTCCATCAAGGAATTGCTCACGCTTCTGGTTGACGAAGAAACGTTGCAGGCTTTCGGTTGGCCCGACGCCCCCGTCGACAAGATACTCGATTCGGTGATCAAACGTTGTGGACATAAACCGGCTTCTAACGAGGATTTCGATTACATCGGACGTTTGCGCGAGAATGCCAAGCTTTTGTTCACAGTTGTGATAGACGACGAGGCTGTTAAGTCGTTATTGAACAACCAGACTGTCGACGAGGTCATACATCATGTGCTACAACTGGCCAAAACGGACTGA
Protein Sequence: MEEEEVSSLDVQKIEPLELECEEEDIKTTLLQNVELPSEGSNQSIFLDGFPPVTNSDGNLEINSFDDPHESAIINDPTLDGVTEDRIEEIEIEENGHEEVESDFIIEEQTENVVDSRYIQVDSGGHYIQLRSGQKYVQIAETGEYLEIHDADDFEIEDQSQEYPSSVDEDDAANEEEEMRVEMQTEDEDDEEEEPMTEDDEAEINYNSETTDDPNDPDFEVKPKKKEPIIDEPNPCTICQRTFKTSASLKRHITVVHPSEKESQEDPLAFELCYCCGEPVDSAHTTGDYECSECGKLFVMSNSLQRHQSIEHGHDLWKCVECEKVFADRQMLIDHMPIHPLTKPYYCKDCHREFARKYNLIRHYSQTGCNGSTRMMFKCPICKKIFARKDNLREHLRSHTGTAKKKKTFICEYCHKEFHGSTLLIVHMRTHTGERPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYECAKCGNKFAAKETLNRHVRTHTGHKPHKCQFCGKAFIQAAQLRAHIFHHTGENAYTCPHCNRAFNRRARLTMHVKFVHEGAKPLQCNQCEKSFYRKEDLSRHELLHSGVKPFECEVCLKRFAIKSSLKLHLLTHRKEQPCKCDECGRAFIRQDCLLRHMRSKHRDLLEDIMAGAEKKRLQQQLLKVASAAASNKESGGSLSDNRIWNELTLTDSIKELLTLLVDEETLQAFGWPDAPVDKILDSVIKRCGHKPASNEDFDYIGRLRENAKLLFTVVIDDEAVKSLLNNQTVDEVIHHVLQLAKTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030386;
90% Identity: iTF_00030386;
80% Identity: -