Basic Information

Insect: Agrilus biguttatus
Gene Symbol: su(Hw)
Assembly: GCA_963921985.1
Location: OY998118.1:37739980-37742977[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.8e-06 0.00019 21.9 0.5 3 23 235 256 234 256 0.95

2 13 1.7e-05 0.0012 19.4 0.3 1 23 288 311 288 311 0.97

3 13 0.00012 0.008 16.8 0.1 2 23 317 338 316 338 0.96

4 13 1.5e-05 0.001 19.6 2.2 1 20 344 363 344 365 0.95

5 13 2.4e-08 1.7e-06 28.4 0.9 1 23 376 398 376 398 0.99

6 13 1.4e-05 0.001 19.7 1.4 1 23 408 430 408 430 0.98

7 13 4.9e-06 0.00035 21.1 0.3 1 23 436 458 436 458 0.98

8 13 1.4e-05 0.00096 19.7 0.7 1 23 464 486 464 486 0.99

9 13 2.1e-05 0.0015 19.1 2.3 1 23 492 514 492 514 0.96

10 13 7e-05 0.0049 17.5 2.1 1 23 520 543 520 543 0.95

11 13 6.8e-06 0.00048 20.7 1.0 2 23 550 571 549 571 0.95

12 13 9e-05 0.0063 17.2 0.4 1 23 577 599 577 599 0.98

13 13 4.9e-06 0.00034 21.1 3.6 2 23 606 628 605 628 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.8e-06	0.00019	21.9	0.5	3	23	235	256	234	256	0.95
2	13	1.7e-05	0.0012	19.4	0.3	1	23	288	311	288	311	0.97
3	13	0.00012	0.008	16.8	0.1	2	23	317	338	316	338	0.96
4	13	1.5e-05	0.001	19.6	2.2	1	20	344	363	344	365	0.95
5	13	2.4e-08	1.7e-06	28.4	0.9	1	23	376	398	376	398	0.99
6	13	1.4e-05	0.001	19.7	1.4	1	23	408	430	408	430	0.98
7	13	4.9e-06	0.00035	21.1	0.3	1	23	436	458	436	458	0.98
8	13	1.4e-05	0.00096	19.7	0.7	1	23	464	486	464	486	0.99
9	13	2.1e-05	0.0015	19.1	2.3	1	23	492	514	492	514	0.96
10	13	7e-05	0.0049	17.5	2.1	1	23	520	543	520	543	0.95
11	13	6.8e-06	0.00048	20.7	1.0	2	23	550	571	549	571	0.95
12	13	9e-05	0.0063	17.2	0.4	1	23	577	599	577	599	0.98
13	13	4.9e-06	0.00034	21.1	3.6	2	23	606	628	605	628	0.95

Sequence Information

Coding Sequence: ATGGAAGAAGAAGAATCTTCTTCCTTGGATGTACATAAAACTGAACCTGAAGAGTTTGACTCTGAAGAGGAAGATATAAAGACAACTTTGCTACAGAATGTAGAACTTCCATCAGTGAGCAACACTCAAGCAGTCTTTTTAGATGGATTCCCACCTGTCACAAATTCTGATGGGAATTtggaaataaacagttttgatGATCCTGATGAAAGTGGTGTAAATAACCCTACATTAGATGAAGAAACAGAAGAGCAAATTGAAGAAATAGAAATTGAAGAAGATGGTCATGAAGAAGTAGAATCAGACTTTATAATAGAGGAACAGACCGAAAATGTTCTTGACTCACAATTCATTCAAGTGGAGACTGGGGGACAATATATACAACTAAGATCTGGTCAAAAGTATGTTCAGATTGCCGAAACAGGTGAATATCTTGAAATCCATGATGCAGATGACTTTGAAATTGAAGATCAAACACAAGAATATCCATCCTCTGTTGAGGAGGATGCAGTTAATGAAGATGATGAGGCAATGAGAGTATCAGCACAAACTGAggatgaagaagaagaagaagaagaagaaccCATGACAGAAGATGAGGctgaaataaattacaatagtgaAACAACAGATGATCCAAATGACCCTGATTTTGAAGTTAAACCTAAAAAGAATGAGTCCAATAATGATGAACAAAACCCCTGTACAATTTGTCAGAGAACTTTTAAAACATCAGCGagTTTGAAAAGGCATATAACTGTTGTTCATCCATCAGAGAAGGAAAGTCAGGAAGATCCTTTAGCCTTTGAGCTTTGCTACTGTTGTGGAGAACCTGTGGATTCAGCCCATACGACGGGTGATTATGAATGCAGTGAATGTGGCAAATTGTTCGTGATGTCGAACAGTCTTCAACGGCACCAGAGTATCGAACACGGTAACGACATGTGGAAATGCGTCGAGTGTGAGAAAGTGTTTCCAGAACGTCAAAACCTCATCGATCACATGACCATCCATCCACTAACGAAGCCTTACTATTGCAAAGAATGTCATAGGGAGTTTGCTAGGAAGTACAATCTCATCAGGCACTATTCCCAGACAGGATGCAACGGGAGCACTAAAATGATGTTTAAATGTCCTATTTGCAAGAAGATTTTTGCAAGAAAAGACAATCTTCGAGAACATTTGAGAAGCCATGCAGGTAACATGAAAAAGAAGAAGACTTTTGTTTGTGAATATTGTCAAAAAGAATTCCACGGGTCTACTCTGCTGATAGTTCATATGAGAACCCATACTGGTGAAAGACCTTACCCTTGTGACCTTTGTCCTAAGCGATTTCCTTCAAGCGGTGCAATGAAGAAGCATCGACGAATGCATACAGGAGAAAAGCCCTATGAATGCTCCAAAtGTGGAAACAAATTTGCGGCCAAAGAAACGCTTAATCGACATGTGCGTACTCACACGGGCCACAAGCCGCACAAGTGCCAGTTTTGCGGCAAGGCTTTTATCCAAGCAGCGCAGTTACGGGCCCACATTTTTCACCATACCGGTGAGAACGCATACACTTGCCCCCATTGTAATCGGGCTTTCAATAGGCGAGCGCGTCTTACTATGCACGTTAAGTTCGTACACGAGGGCGCAGATCCTTTACAATGCAACCAATGTGATAAATCATTCTATCGCAAGGAAGACCTGTCCAGACACGAACTACTCCATTCTGGAGTGAAACCTTTCGAATGCGAGGTGTGTTTGAAACGTTTCGCCATCAAATCTTCGCTCAAACTTCACCTGTTGACTCATCGCAAGGAGCAGCCGTGCAAATGCGACGAATGCGGTCGAGCTTTCATTCGTCAGGACTGCCTGTTGCGACATATGCGTGCTAAGCATCGAGACCTCTTGGAAGACATAATGGCCGGAGCAGAGAAGAAACGTCTTCAGCAACAGCTATTGAAAGCGGCTTCCGTTGCCGCATCGAACAAAGAGAGCGGCACGTCGTTGTGTGACAACCGTATTTGGAATGAACTCACGTTGACTGATTCTATCAAAGAACTGCTCACGCTTTTGGTTGACGAAGAAACATTGCAAGCTTTTGGATGGCCTGATGCCCCCGTCGACAAGATACTTGATTCAGTGATCAAACGTTGTGGACACAAACCCGCTTCTGATGAAGATTTCGATTACATTGGTCGTTTACGAGAGAACGCAAAGCTTCTATTCACAGTAGTAATAGACGACGAAGCTGTTAAATCGCTGTTAAACAACCAGACTGTCGACGAGGTTATTCTTCATGTGCTTCAACTGGCTAAAACGGACTGA
Protein Sequence: MEEEESSSLDVHKTEPEEFDSEEEDIKTTLLQNVELPSVSNTQAVFLDGFPPVTNSDGNLEINSFDDPDESGVNNPTLDEETEEQIEEIEIEEDGHEEVESDFIIEEQTENVLDSQFIQVETGGQYIQLRSGQKYVQIAETGEYLEIHDADDFEIEDQTQEYPSSVEEDAVNEDDEAMRVSAQTEDEEEEEEEEPMTEDEAEINYNSETTDDPNDPDFEVKPKKNESNNDEQNPCTICQRTFKTSASLKRHITVVHPSEKESQEDPLAFELCYCCGEPVDSAHTTGDYECSECGKLFVMSNSLQRHQSIEHGNDMWKCVECEKVFPERQNLIDHMTIHPLTKPYYCKECHREFARKYNLIRHYSQTGCNGSTKMMFKCPICKKIFARKDNLREHLRSHAGNMKKKKTFVCEYCQKEFHGSTLLIVHMRTHTGERPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYECSKCGNKFAAKETLNRHVRTHTGHKPHKCQFCGKAFIQAAQLRAHIFHHTGENAYTCPHCNRAFNRRARLTMHVKFVHEGADPLQCNQCDKSFYRKEDLSRHELLHSGVKPFECEVCLKRFAIKSSLKLHLLTHRKEQPCKCDECGRAFIRQDCLLRHMRAKHRDLLEDIMAGAEKKRLQQQLLKAASVAASNKESGTSLCDNRIWNELTLTDSIKELLTLLVDEETLQAFGWPDAPVDKILDSVIKRCGHKPASDEDFDYIGRLRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLQLAKTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00031272; iTF_00032222;
90% Identity: iTF_00031272; iTF_00032222;
80% Identity: -