Abig018034.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998126.1:21145479-21146661[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.23 1.6e+03 -0.5 0.1 23 51 72 99 69 103 0.73 2 8 0.086 6.2e+02 0.9 0.2 22 43 127 148 124 152 0.71 3 8 0.01 74 3.8 0.3 18 52 150 185 141 188 0.81 4 8 4.4e-07 0.0031 17.8 0.1 21 46 210 235 203 238 0.91 5 8 0.33 2.4e+03 -1.0 0.0 27 45 257 275 255 283 0.79 6 8 0.016 1.2e+02 3.2 0.0 18 44 275 302 268 309 0.79 7 8 0.015 1.1e+02 3.3 0.1 22 44 308 330 304 334 0.87 8 8 0.00068 4.9 7.6 0.0 21 44 335 358 329 360 0.83
Sequence Information
- Coding Sequence
- ATGGAAACAGATCCTTATGACATTTCTACCATAATAAAAACAGAACCCTGCGAGTTTTTAACTACTCAAGAAGCAGATTCTACTGAAACCCCATTTATACCAAATATAGACCCTTGTATGCCTCCATTCCACTGTCTTGTATGTCAAGATGAAGAAATTTATCCAGCTGAAGACAATTTAAAGGGGCACATGCAGCAGTTTCATCCACATCAGAAGCCTTTTGAATGTAACTTTTGTAAGAAAAAGTTCTCACACATATACACTCTTAAGAGGCATGTGGCAAGGCACCTAATGAAGAAAACATTCAAATGCAGCATCTGTGAAAAGGCATTTACAGATAATAcacatttaaaaattcatatCAACTATCACTTAAATGAAAGACCACACAAATGTAATATATGCCAAAAAACGTACATGGAGAAGTCAAGATTGAAAGTACACATGCGTTCTCATACGGGAGAGAAACCATACATATGCAACATTtgtcaaaaatcattttatgaAGCTGCTCAACTTACAGTACATTATAGGTTACATAATAGCGAAAAACCATTTAAATGTAGCTATTGTGAGAAACCCTTTATAAAAAATGCTTTACTGGAAGCACATGTTCGCACACATACGGGAGAAAAACCGTTCCAATGTaatgtttgtttaaaaaaatttacgCAAAAGCGTAACTTAAAAAGACACTTGGAAACGCACTTGGAGGGATATGATCCTAAAAAAAATTCAGAATACGCCAAGTACGGGAAAATATACAAATGCTACACTTGTCAAAAATCGTTTACGCAAAGTGCATCGTTGAAAACCCACATTCGTTCTCATACGGGGGAAAAACCGTACAAATGTGAAATTTGCGAGAAAGCTTTTTCTGGAAAGAAAGCGCTTAAGAATCACGTTAAGGCGCATGGCGCTGAAAAGATTCACAAATGCGATATTTGCGACAAATCTTTCGCTCAAAATTCACATTTAAAAAGACACGTGCGATCTCACACAGGGGAAAAACCGTTCACTTGCAATATTTGTCACAAGTCGTTCACAGAAAATAGTACACTCAAGAAACATTTTAGAGACGTTTGCGAAAAGATTTCTATACAACAACTTACTCGAAATGCACATGTACgataa
- Protein Sequence
- METDPYDISTIIKTEPCEFLTTQEADSTETPFIPNIDPCMPPFHCLVCQDEEIYPAEDNLKGHMQQFHPHQKPFECNFCKKKFSHIYTLKRHVARHLMKKTFKCSICEKAFTDNTHLKIHINYHLNERPHKCNICQKTYMEKSRLKVHMRSHTGEKPYICNICQKSFYEAAQLTVHYRLHNSEKPFKCSYCEKPFIKNALLEAHVRTHTGEKPFQCNVCLKKFTQKRNLKRHLETHLEGYDPKKNSEYAKYGKIYKCYTCQKSFTQSASLKTHIRSHTGEKPYKCEICEKAFSGKKALKNHVKAHGAEKIHKCDICDKSFAQNSHLKRHVRSHTGEKPFTCNICHKSFTENSTLKKHFRDVCEKISIQQLTRNAHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030397;
- 90% Identity
- iTF_00030397;
- 80% Identity
- iTF_00030397;